CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

nucleus 1
peroxisome 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
PProwler:	peroxisome
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79511
CDX84701
CDY17140
CDY19452
CDY23766
CDY37750

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G43280.1	CDX79511	AT2G33150.1	24879895
AT5G43280.1	CDX84701	AT2G33150.1	24879895
AT5G43280.1	CDY17140	AT2G33150.1	24879895
AT5G43280.1	CDY19452	AT2G33150.1	24879895
AT5G43280.1	CDY23766	AT2G33150.1	24879895
AT5G43280.1	CDY37750	AT2G33150.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027479.1-P	Field mustard	peroxisome	98.91	98.91
CDY43605	Canola	peroxisome	95.29	95.29
AT5G43280.1	Thale cress	peroxisome	88.41	87.77
VIT_01s0146g00270.t01	Wine grape	peroxisome	71.74	72.0
KRH66641	Soybean	peroxisome	65.22	65.93
Solyc05g024240.2.1	Tomato	nucleus	52.9	62.93
TraesCS3D01G430400.2	Wheat	peroxisome	58.33	55.52
TraesCS3D01G430300.1	Wheat	peroxisome	58.33	55.52
TraesCS3B01G472000.1	Wheat	peroxisome	58.33	55.52
TraesCS3A01G438000.1	Wheat	peroxisome	58.33	55.52
TraesCS3A01G438100.1	Wheat	peroxisome	57.61	54.83
Os01t0925200-01	Rice	nucleus, plasma membrane	56.52	53.61
Zm00001d011971_P001	Maize	mitochondrion, peroxisome	55.8	53.47
KXG34022	Sorghum	peroxisome	56.16	52.72
GSMUA_Achr7P22470_001	Banana	peroxisome	55.07	52.6
CDX90535	Canola	peroxisome	22.83	24.32
CDY09705	Canola	cytosol, mitochondrion, peroxisome	22.83	24.32
CDY67750	Canola	mitochondrion	25.0	22.92
CDY47214	Canola	cytosol, mitochondrion, peroxisome	25.36	21.21
CDY53045	Canola	cytosol, mitochondrion, peroxisome	25.36	20.71
CDY05296	Canola	peroxisome	25.36	9.66
CDY24662	Canola	peroxisome	25.36	9.64
CDY34924	Canola	peroxisome	25.0	9.49
CDY08028	Canola	peroxisome	24.64	9.37
CDX74076	Canola	peroxisome	24.28	9.23
CDY35240	Canola	peroxisome	22.83	8.73
CDX97462	Canola	peroxisome	22.46	8.6
CDY06852	Canola	peroxisome	22.46	8.59
CDY66477	Canola	peroxisome	22.1	8.46
CDX92908	Canola	peroxisome	21.74	7.62
CDY69211	Canola	mitochondrion, peroxisome	12.68	5.74
CDX97647	Canola	peroxisome	3.62	3.17
CDX98542	Canola	peroxisome	3.26	3.1

Protein Annotations

Gene3D:1.10.12.10	Gene3D:3.90.226.10	MapMan:5.7.3.5.2	GO:A0A078H7T1	UniProt:A0A078H7T1	EnsemblPlants:CDY32958
ProteinID:CDY32958	ProteinID:CDY32958.1	InterPro:ClpP/crotonase-like_dom_sf	InterPro:Enoyl-CoA_hyd/isom_CS	InterPro:Enoyl-CoA_hydra/iso	InterPro:Enoyl-CoA_hydra_C
GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	EnsemblPlantsGene:GSBRNA2T00053166001	InterPro:IPR014748
PFAM:PF00378	ScanProsite:PS00166	PANTHER:PTHR43149	PANTHER:PTHR43149:SF1	SUPFAM:SSF52096	UniParc:UPI0004EE46E9
SEG:seg	:	:	:	:	:

Description

BnaA09g16350DBnaA09g16350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7T1]

Coordinates

chrLK032303:-:328344..329439

Molecular Weight (calculated)

29683.7 Da

IEP (calculated)

6.916

GRAVY (calculated)

0.011

Length

276 amino acids

Sequence
(BLAST)

001: MESYKTLEIV RKNTDSSVFH LILNRPSQLN ALSLDFFDEL PEALSSLDQN PDVSVIILSG AGKHFCSGID LASLSSISAQ ASSGGDRGRS SEGLRRRIKS
101: MQAAITAVEE CRKPVIAAVH GACIGGGVDL VTACDVRYCS EEAFFSIKEV DLAIVADLGT LQRLPRIVGH AKAMELALTA RRFSGSEAKD LGLVSQVFGS
201: KSELDKGVTM IAERIAAKSP LAVTGTKAVL LRSREMSVEQ GLDYVATWNS GMLISDDLNE SVSAQMMKRQ PRFSKL

Best Arabidopsis Sequence Match ( AT5G43280.1 )
(BLAST)

001: MTMESYKTLE IIRKNTDSSV FHLIINRPSH LNALSLDFFI EFPKALSSLD QNPDVSVIIL SGAGKHFCSG IDLNSLSSIS TQSSSGNDRG RSSEQLRRKI
101: KSMQAAITAI EQCRKPVIAA IHGACIGGGV DLITACDIRY CSEDAFFSIK EVDLAIVADL GTLQRLPSIV GYANAMELAL TARRFSGSEA KDLGLVSKVF
201: GSKSELDNGV TTIAEGIGGK SPLAVTGTKA VLLRSREVSV EQGLDYVATW NSAMLISDDL NEAVSAQMMK RKPRFAKL

Arabidopsis Description

DCI1Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q9FHR8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.