CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33150.1	CDY11941	AT5G56290.1	24879895
AT2G33150.1	CDY20736	AT5G56290.1	24879895
AT2G33150.1	CDY36789	AT5G56290.1	24879895
AT2G33150.1	CDY49390	AT5G56290.1	24879895
AT2G33150.1	CDY66434	AT5G56290.1	24879895
AT2G33150.1	CDY66435	AT5G56290.1	24879895
AT2G33150.1	CDY67858	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17140	Canola	cytosol	99.35	99.57
CDX84701	Canola	cytosol	97.84	98.05
CDX79511	Canola	cytosol	97.62	97.84
CDY23766	Canola	cytosol	96.76	96.97
AT2G33150.1	Thale cress	cytosol	96.33	96.54
CDY37750	Canola	mitochondrion	96.11	96.32
CDX86611	Canola	cytosol	85.31	87.58
VIT_05s0051g00720.t01	Wine grape	cytosol	86.39	86.77
CDY15520	Canola	mitochondrion	84.23	86.47
PGSC0003DMT400076175	Potato	cytosol	85.96	85.59
Solyc09g091470.2.1	Tomato	plastid	85.96	85.59
KRH33469	Soybean	endoplasmic reticulum, nucleus	84.67	84.67
KRG90241	Soybean	nucleus	84.02	84.38
CDY33940	Canola	cytosol	67.6	68.64
CDY05657	Canola	cytosol	66.52	66.67
CDY19963	Canola	plastid	30.02	34.49
CDY00071	Canola	plastid	30.02	34.49
CDY48742	Canola	plastid	29.59	33.99
CDX85319	Canola	mitochondrion	30.45	33.18
CDX86320	Canola	mitochondrion	29.81	32.47
CDY25950	Canola	cytosol	28.73	32.05
CDY41065	Canola	cytosol, peroxisome, plastid	28.73	32.05
CDY05693	Canola	cytosol, mitochondrion, peroxisome	21.17	29.97
CDY05692	Canola	cytosol, plastid	9.94	21.0

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:A0A078G370	UniProt:A0A078G370	EnsemblPlants:CDY19452	ProteinID:CDY19452
ProteinID:CDY19452.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00009021001	InterPro:IPR016039	PFAM:PF00108	PFAM:PF02803
ScanProsite:PS00098	ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4	SUPFAM:SSF53901
TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS
InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS	UniParc:UPI0004EC5574	SEG:seg	:	:

Description

BnaC04g11470DBnaC04g11470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G370]

Coordinates

chrLK032096:-:228089..231325

Molecular Weight (calculated)

48654.3 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.062

Length

463 amino acids

Sequence
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSSHSFEGSL SASACLAGDS AAYQRTSLYG DDVVIVAAHR TALCKSKRGN FKDTYPDDLL APVLRALIEK TNLNPSDVGD
101: IVVGTVLAPG SQRASECRMS AFYAGFPETV PVRTVNRQCS SGLQAVADVA AAIKAGFYDI GIGAGLESMT TNPMAWEGSV NPAVKKFEQA QNCLLPMGVT
201: SENVAQRFGV SRQEQDQAAV DSHRKAAAAT AAGKFKDEII PVKTKLVDPK TGDEKPITVS VDDGIRPSTT LATLGKLKPV FKKDGTTTAG NSSQVSDGAG
301: AVLLMRRSVA TQKGLPVLGV FRTFAAVGVD PAIMGVGPAV AIPAAVKAAG LELDDIDLFE INEAFASQFV YCRNKLGLDA EKINVNGGAM AIGHPLGATG
401: ARCVATLLHE MKRRGKDCRF GVVSMCIGTG MGAAAVFERG DGVDELRNAR KVESHGLLSK DAR

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.