CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030586.1-P	Field mustard	mitochondrion	96.67	96.67
CDX86611	Canola	cytosol	96.01	96.01
AT1G04710.1	Thale cress	cytosol	88.03	89.62
CDX79511	Canola	cytosol	86.47	84.42
CDX84701	Canola	cytosol	86.47	84.42
CDY23766	Canola	cytosol	86.47	84.42
CDY19452	Canola	cytosol	86.47	84.23
CDY37750	Canola	mitochondrion	86.25	84.2
CDY17140	Canola	cytosol	86.03	83.98
VIT_05s0051g00720.t01	Wine grape	cytosol	82.04	80.26
KRH33469	Soybean	endoplasmic reticulum, nucleus	81.6	79.48
KRG90241	Soybean	nucleus	81.15	79.39
Solyc09g091470.2.1	Tomato	plastid	81.6	79.14
PGSC0003DMT400076175	Potato	cytosol	81.6	79.14
CDY33940	Canola	cytosol	70.29	69.52
CDY05657	Canola	cytosol	69.18	67.53
CDY00071	Canola	plastid	29.93	33.5
CDY19963	Canola	plastid	29.93	33.5
CDY48742	Canola	plastid	29.49	33.0
CDX85319	Canola	mitochondrion	30.16	32.0
CDX86320	Canola	mitochondrion	29.93	31.76
CDY25950	Canola	cytosol	29.05	31.57
CDY41065	Canola	cytosol, peroxisome, plastid	28.82	31.33
CDY05693	Canola	cytosol, mitochondrion, peroxisome	21.51	29.66
CDY05692	Canola	cytosol, plastid	10.42	21.46

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:A0A078FM99	UniProt:A0A078FM99	EnsemblPlants:CDY15520	ProteinID:CDY15520
ProteinID:CDY15520.1	ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00089692001	InterPro:IPR016039	PFAM:PF00108
PFAM:PF02803	PIRSF:PIRSF000429	ScanProsite:PS00098	ScanProsite:PS00099	ScanProsite:PS00737	PFscan:PS51257
PANTHER:PTHR43853	PANTHER:PTHR43853:SF4	SUPFAM:SSF53901	TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like
InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS	UniParc:UPI0004EDF418
SEG:seg	:	:	:	:	:

Description

BnaA08g28040DBnaA08g28040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FM99]

Coordinates

chrLK032055:+:346294..349038

Molecular Weight (calculated)

47282.9 Da

IEP (calculated)

8.719

GRAVY (calculated)

-0.025

Length

451 amino acids

Sequence
(BLAST)

001: MEKAMERQRV LLHHLQPPLP SSSSQASLSV SACLAGGSAA YQRTSLYGDD VVIVAAQRTA LCKAKRGSFK DTYPDELLAS VLRAVIEKTK LDPSEVGDIV
101: VGTVLGSGSQ KATEFRMAAF YAGFPETVPV RTVNRQCSSG LQAVADVAAA IKAGFYDIGI GAGLESMTTS PRGWKGSVNP KVQKFEQAQS CLLPMGITSE
201: NVAHRFGVSR EEQDQAAVDS HRKAASATAS GKFKDEITPV NTRIVDPKTG DEKPITVSVD DGIRPSTTLS GLAKLKPVFK KDGSTTAGNS SQVSDGAGAV
301: LLMKRSVAIK KELPILGVFR TFAAVGVDPA VMGVGPAAAI PAAVKAAGLE LDDIDLFEIN EAFASQFVYC RNKLGLVPEK INVNGGAIAI GHPLGATGAR
401: CVATLLHEMK RRGKDCRFGV VSMCIGSGMG AAGVFERGDG VDELSNVRKV E

Best Arabidopsis Sequence Match ( AT1G04710.1 )
(BLAST)

001: MEKATERQRI LLRHLQPSSS SDASLSASAC LSKDSAAYQY GDDVVIVAAQ RTALCKAKRG SFKDTFPDEL LASVLRALIE KTNVNPSEVG DIVVGTVLGP
101: GSQRASECRM AAFYAGFPET VPIRTVNRQC SSGLQAVADV AAAIKAGFYD IGIGAGLESM TTNPRGWKGS VNPNVKKFEQ AHNCLLPMGI TSENVAHRFN
201: VSREEQDQAA VDSHRKAASA TASGKFKDEI TPVKTKIVDP KTGDEKPITV SVDDGIRPNT TLSGLAKLKP VFKEDGTTTA GNSSQLSDGA GAVLLMRRNV
301: AMQKGLPILG VFRTFSAVGV DPAIMGVGPA VAIPAAVKAA GLELNDVDLF EINEAFASQF VYCRNKLGLD AEKINVNGGA IAIGHPLGAT GARCVATLLH
401: EMKRRGKDCR FGVVSMCIGS GMGAAAVFER GGGVDELCDV RKV

Arabidopsis Description

KAT1PKT4 [Source:UniProtKB/TrEMBL;Acc:A0A178W7T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.