Factsheet for PGSC0003DMT400076175

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
peroxisome 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029209

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33150.1	PGSC0003DMT400029209	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g091470.2.1	Tomato	plastid	99.35	99.35
VIT_05s0051g00720.t01	Wine grape	cytosol	88.82	89.59
AT2G33150.1	Thale cress	cytosol	86.45	87.01
CDY19452	Canola	cytosol	85.59	85.96
Bra005522.1-P	Field mustard	cytosol	85.16	85.71
CDY17140	Canola	cytosol	85.16	85.71
Bra022927.1-P	Field mustard	cytosol	84.3	85.22
CDY37750	Canola	mitochondrion	84.52	85.06
CDY23766	Canola	cytosol	84.3	84.85
Bra021829.1-P	Field mustard	cytosol	84.3	84.85
CDX84701	Canola	cytosol	84.3	84.85
CDX79511	Canola	cytosol	84.09	84.63
KRH33469	Soybean	endoplasmic reticulum, nucleus	84.09	84.45
KRG90241	Soybean	nucleus	83.23	83.95
AT1G04710.1	Thale cress	cytosol	79.57	83.52
CDX86611	Canola	cytosol	80.86	83.37
Bra030586.1-P	Field mustard	mitochondrion	79.78	82.26
CDY15520	Canola	mitochondrion	79.14	81.6
PGSC0003DMT400040876	Potato	cytosol	79.35	80.92
PGSC0003DMT400044777	Potato	cytosol	30.32	34.9
PGSC0003DMT400028289	Potato	cytosol	29.68	34.16
PGSC0003DMT400050843	Potato	cytosol, peroxisome, plastid	30.11	34.06

Protein Annotations

EntrezGene:102578706	Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1CWA6
PFAM:PF00108	PFAM:PF02803	EnsemblPlantsGene:PGSC0003DMG400029618	PGSC:PGSC0003DMG400029618	EnsemblPlants:PGSC0003DMT400076175	ScanProsite:PS00098
ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4	SUPFAM:SSF53901	TIGRFAMs:TIGR01930
InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N
InterPro:Thiolase_acyl_enz_int_AS	UniParc:UPI0002948C7B	RefSeq:XP_006360332.1	SEG:seg	:	:

Description

3-ketoacyl CoA thiolase 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400029618]

Coordinates

chr9:+:58286615..58291622

Molecular Weight (calculated)

48940.9 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.015

Length

465 amino acids

Sequence
(BLAST)

001: MDKAIERQRV LLQHLRPSQT SSSLENIESS ISASVCSAGD SAAYQRTSVF GDDVVIVAAY RTPLCKAKKG GFKDTYPDDI LAAVLKAVIE KTNVNPSEVG
101: DIVVGSVLAP GSQRASECRM AAFYAGFPET VPIRTVNRQC SSGLQAVADV AAAIKAGFYD IGIGAGLESM TTNPMAWEGS VNPKVKTMVQ AQDCLLPMGI
201: TSENVAHRFG VTRQEQDQAA VDSHRKAAAA TASGKFKDEI IPVATKIVDP KTGDEKPVTI SVDDGIRPNA SVSDLAKLKP VFKKSGTTTA GNSSQVTDGA
301: GAVLLMKRSI AMQKGLPILG VFRTFAAVGV DPAIMGIGPA VAIPAAVKSA GLELEDIDLF EINEAFASQF VYCRKKLGLD PEKINVNGGA MAIGHPLGAT
401: GARCVATLLH EMKRRGKDCR FGVVSMCIGT GMGAAAVFER GDSCDELRNA RKIDSHNHLL SKDAL

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.