Factsheet for PGSC0003DMT400040876

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
peroxisome 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g061840.2.1	Tomato	cytosol	98.9	98.9
KRH49796	Soybean	endoplasmic reticulum	77.85	79.78
PGSC0003DMT400076175	Potato	cytosol	80.92	79.35
KRG89223	Soybean	mitochondrion	77.19	79.1
GSMUA_Achr8P12850_001	Banana	cytosol	79.17	78.65
VIT_07s0005g05610.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	75.22	77.43
TraesCS1D01G142700.1	Wheat	mitochondrion	77.85	77.01
Zm00001d014093_P002	Maize	mitochondrion	77.63	76.79
EER94131	Sorghum	mitochondrion	77.63	76.62
TraesCS1A01G143900.2	Wheat	mitochondrion	77.41	76.57
Os10t0457600-01	Rice	golgi, plasma membrane	77.19	76.36
TraesCS1B01G161300.1	Wheat	golgi	76.75	75.92
HORVU1Hr1G038330.1	Barley	cytosol	76.1	74.78
GSMUA_Achr11P...	Banana	cytosol	74.56	74.07
CDY33940	Canola	cytosol	73.25	73.25
Bra020673.1-P	Field mustard	cytosol	73.03	73.03
AT5G48880.2	Thale cress	mitochondrion	72.15	71.99
CDY05657	Canola	cytosol	71.93	71.0
PGSC0003DMT400044777	Potato	cytosol	30.26	34.16
PGSC0003DMT400050843	Potato	cytosol, peroxisome, plastid	30.04	33.33
PGSC0003DMT400028289	Potato	cytosol	29.17	32.92

Protein Annotations

EntrezGene:102589894	Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1BAK9	PFAM:PF00108
PFAM:PF02803	EnsemblPlantsGene:PGSC0003DMG400015808	PGSC:PGSC0003DMG400015808	EnsemblPlants:PGSC0003DMT400040876	ScanProsite:PS00098	ScanProsite:PS00099
ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4	SUPFAM:SSF53901	TIGRFAMs:TIGR01930	InterPro:Thiolase
InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS
UniParc:UPI000294CD7D	RefSeq:XP_006350308.1	SEG:seg	:	:	:

Description

3-ketoacyl CoA thiolase 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015808]

Coordinates

chr9:-:44898545..44903873

Molecular Weight (calculated)

47911.9 Da

IEP (calculated)

8.087

GRAVY (calculated)

0.092

Length

456 amino acids

Sequence
(BLAST)

001: MEKAIERQRV LLEHLQPIRS SSITPSVCLA GDSSAYHRTS AFGDDVVIVA AYRTAICKAK RGGFKDTLSD DLLAPVLKAV VEKTNLNPNE VGDIVVGTVL
101: APGSIRAMEC RMAAFYAGFP DTVPIRTVNR QCSSGLQAVA DVAAAIKAGF YDIGIGAGLE LMTVDNIGLV QKANPKVDAF AQARDCLLPM GITSENVAQR
201: FGVTRLEQDQ AAVISHQRAA AATASGKFKD EIIPVLTKIV DPQTGDEKPV VISVDDGIRP TTNLTGLAKL KPAFKRDGAT TAGNSSQVSD GAAAVLLMKR
301: SIAMQKGLPI LGVFRSFAAV GVDPAVMGIG PAVAIPAAVK SAGLELNNID LFEINEAFAS QYVYCQKKLN LDPENVNVNG GALALGHPLG ATGARCVATL
401: LHEMKRRGKD CRFGVISMCI GSGMGAAAVF ERGDAVDDLC NARANNNNNF LSKDAK

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.