Factsheet for TraesCS1B01G161300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G143900.2	Wheat	mitochondrion	97.83	97.83
TraesCS1D01G142700.1	Wheat	mitochondrion	97.61	97.61
HORVU1Hr1G038330.1	Barley	cytosol	96.31	95.69
EER94131	Sorghum	mitochondrion	89.37	89.18
Zm00001d014093_P002	Maize	mitochondrion	88.5	88.5
Os10t0457600-01	Rice	golgi, plasma membrane	88.07	88.07
GSMUA_Achr8P12850_001	Banana	cytosol	79.18	79.52
Solyc09g061840.2.1	Tomato	cytosol	76.36	77.19
PGSC0003DMT400040876	Potato	cytosol	75.92	76.75
KRH49796	Soybean	endoplasmic reticulum	73.97	76.63
GSMUA_Achr11P...	Banana	cytosol	75.7	76.03
KRG89223	Soybean	mitochondrion	73.1	75.73
TraesCS6B01G432600.1	Wheat	mitochondrion	74.19	74.35
VIT_07s0005g05610.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	71.15	74.04
Bra020673.1-P	Field mustard	cytosol	67.46	68.2
CDY33940	Canola	cytosol	67.25	67.98
AT5G48880.2	Thale cress	mitochondrion	66.38	66.96
CDY05657	Canola	cytosol	67.03	66.88
TraesCS3B01G008700.1	Wheat	cytosol	31.24	34.45
TraesCS5B01G166200.2	Wheat	cytosol, mitochondrion, peroxisome	29.28	33.92
TraesCS2B01G049200.1	Wheat	golgi	29.07	33.42

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0016747	InterPro:IPR016039	PFAM:PF00108	PFAM:PF02803	ScanProsite:PS00098	ScanProsite:PS00099
ScanProsite:PS00737	PFscan:PS51257	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4	SUPFAM:SSF53901	TIGRFAMs:TIGR01930
InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N
InterPro:Thiolase_acyl_enz_int_AS	EnsemblPlantsGene:TraesCS1B01G161300	EnsemblPlants:TraesCS1B01G161300.1	TIGR:cd00751	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:278089026..278092628

Molecular Weight (calculated)

47994.0 Da

IEP (calculated)

7.638

GRAVY (calculated)

0.131

Length

461 amino acids

Sequence
(BLAST)

001: MEKALDRQRI LLRHLEPAAG ASPAASAISA SACAAGESAA YHRGPCFADD VVIVAAYRTA ICKAKRGSFK DTLPEDLLVP VFKALVDKTK LNPSEVGDIV
101: VGTVLAPGSQ RAIECRMAAL YAGFPDTVPL KTVNRQCSSG LQAVADVAAA IKAGMYDIGI AAGVESMTVN KVDLIGKVNP KVELFAQARD CLLPMGLTSE
201: NVAQQFGITR MEQDQAAVES HRKAAAAVAA GKFKEEIVPV HTKIVDPKTG EEKEIVVSAD DGIRSNTTLA VLSKLKPAFS KDGTTTAGNA SQVSDGAGAV
301: LLMRRDVATQ KGLPILGIYR SFAAVGVDPA VMGVGPAVAI PAAVKAAGLQ INDVDLFEIN EAFASQYVYC SKKLDLDPAK VNVNGGAIAL GHPLGATGAR
401: CVSTLLNEMK RQGKDCRFGV ISMCIGSGMG AAAVFERGDA VDELTNARGV PSLNWLSKDT V

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.