Factsheet for TraesCS1A01G143900.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G142700.1	Wheat	mitochondrion	98.05	98.05
TraesCS1B01G161300.1	Wheat	golgi	97.83	97.83
HORVU1Hr1G038330.1	Barley	cytosol	96.31	95.69
EER94131	Sorghum	mitochondrion	88.94	88.74
Zm00001d014093_P002	Maize	mitochondrion	88.07	88.07
Os10t0457600-01	Rice	golgi, plasma membrane	87.64	87.64
GSMUA_Achr8P12850_001	Banana	cytosol	79.61	79.96
Solyc09g061840.2.1	Tomato	cytosol	77.01	77.85
PGSC0003DMT400040876	Potato	cytosol	76.57	77.41
KRH49796	Soybean	endoplasmic reticulum	74.19	76.85
GSMUA_Achr11P...	Banana	cytosol	75.92	76.25
KRG89223	Soybean	mitochondrion	73.54	76.18
VIT_07s0005g05610.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	71.58	74.49
TraesCS6A01G392400.2	Wheat	mitochondrion	74.4	73.76
Bra020673.1-P	Field mustard	cytosol	67.46	68.2
CDY33940	Canola	cytosol	67.25	67.98
AT5G48880.2	Thale cress	mitochondrion	66.38	66.96
CDY05657	Canola	cytosol	67.03	66.88
TraesCS2A01G036300.1	Wheat	cytosol, mitochondrion, peroxisome	29.72	34.16
TraesCS5A01G169400.1	Wheat	cytosol, mitochondrion, peroxisome	29.28	33.92
TraesCS3A01G003800.1	Wheat	cytosol	30.37	33.49

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0008150	GO:GO:0008152	GO:GO:0016740
GO:GO:0016747	InterPro:IPR016039	PFAM:PF00108	PFAM:PF02803	ScanProsite:PS00098	ScanProsite:PS00099
ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4	SUPFAM:SSF53901	TIGRFAMs:TIGR01930	InterPro:Thiolase
InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS
EnsemblPlantsGene:TraesCS1A01G143900	EnsemblPlants:TraesCS1A01G143900.2	TIGR:cd00751	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:+:248877940..248881446

Molecular Weight (calculated)

48143.2 Da

IEP (calculated)

8.248

GRAVY (calculated)

0.117

Length

461 amino acids

Sequence
(BLAST)

001: MEKALDRQRI LLRHLEPAAG ASPAASAVSA SVCAAGDSAA YHRGPCFADD VVIVAAYRTA ICKAKRGSFK DTLPEDLLVP VFKALVDKTK LNPSEVGDIV
101: VGTVLAPGSQ RAIECRMAAL YAGFPDTVRL KTVNRQCSSG LQAVADVAAA IKAGMYDIGI AAGVESMTVN KVNLVEKVNP KVELFAQARD CLLPMGLTSE
201: NVAQRFGITR MEQDQAAVES HRKAAAAVAA GKFKEEIVPV NTKIVDPKTG EEKEIVVSAD DGIRSNTTLA VLSKLKPAFS KDGTTTAGNA SQVSDGAGAV
301: LLMRRDVATQ KGLPILGIYR SFAAVGVDPA VMGVGPAVAI PAAVKAAGLQ INDVDLFEIN EAFASQYVYC SKKLDLDPAK VNVNGGAIAL GHPLGATGAR
401: CVSTLLNEMK RRGKDCRFGV ISMCIGSGMG AAAVFERGDA VDELTNARGV PSLNWLSKDT V

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.