CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89223	Soybean	mitochondrion	97.08	97.08
VIT_07s0005g05610.t01	Wine grape	cytosol, mitochondrion, peroxisome, plastid	77.75	78.1
Solyc09g061840.2.1	Tomato	cytosol	80.0	78.07
PGSC0003DMT400040876	Potato	cytosol	79.78	77.85
TraesCS1D01G142700.1	Wheat	mitochondrion	77.3	74.62
TraesCS1A01G143900.2	Wheat	mitochondrion	76.85	74.19
GSMUA_Achr8P12850_001	Banana	cytosol	76.4	74.07
EER94131	Sorghum	mitochondrion	76.85	74.03
TraesCS1B01G161300.1	Wheat	golgi	76.63	73.97
Zm00001d014093_P002	Maize	mitochondrion	75.51	72.89
Os10t0457600-01	Rice	golgi, plasma membrane	75.28	72.67
HORVU1Hr1G038330.1	Barley	cytosol	75.73	72.63
KRH33469	Soybean	endoplasmic reticulum, nucleus	75.28	72.35
KRG90241	Soybean	nucleus	74.83	72.23
GSMUA_Achr11P...	Banana	cytosol	72.81	70.59
Bra020673.1-P	Field mustard	cytosol	71.46	69.74
CDY33940	Canola	cytosol	71.46	69.74
AT5G48880.2	Thale cress	mitochondrion	70.34	68.49
CDY05657	Canola	cytosol	71.01	68.4
KRH14066	Soybean	endoplasmic reticulum, nucleus	30.79	33.66
KRH51203	Soybean	cytosol, mitochondrion, peroxisome	30.79	33.5
KRH01946	Soybean	nucleus	30.79	33.5
KRH74050	Soybean	endoplasmic reticulum	30.56	33.42

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	EMBL:ACUP02004643	EnsemblPlantsGene:GLYMA_07G180100	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	UniProt:I1KL36
InterPro:IPR016039	EnsemblPlants:KRH49796	ProteinID:KRH49796	ProteinID:KRH49796.1	PFAM:PF00108	PFAM:PF02803
PIRSF:PIRSF000429	ScanProsite:PS00098	ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4
SUPFAM:SSF53901	TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C
InterPro:Thiolase_CS	InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS	UniParc:UPI0002337C1E	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:34549550..34555641

Molecular Weight (calculated)

46759.4 Da

IEP (calculated)

8.138

GRAVY (calculated)

0.055

Length

445 amino acids

Sequence
(BLAST)

001: MEKAIQRQRV LLEHLQPISS SSNFSSQTHQ STDLSASLCF AGNSSHGQTG GSDDDVVIVA AYRTAICKAK RGGFKDTLPD DLLATVLKAV IEKTNVDPAE
101: VGDIVVGTVL APGSDRGIEC RMAAFYAGFP ETVPLRTVNR QCSSGLQAVS DVAAYIKAGF YDIGIGAGLE SMTVDRVNRL PNINPKVETF AEARDCLLPM
201: GITSENVAQR YGVTRLEQDQ AAVESHKRAA AATAAGKFKE EIIPVSTKFV DPKTGVEKKI IVSVDDGIRP NTNLADLAKL KPAFQKDGTT TAGNASQISD
301: GAAAVLLMKR RVAVQKGLPI LGIFRSFAAV GVDPAVMGVG PAVAIPAAVK SAGLELGNID LFEINEAFAS QYVYCLKKLG LDPRKVNVNG GAIALGHPLG
401: VTGARCVATL LNEMKRGGKD CRFGVISMCI GSGMGAAAVF ERGDF

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.