CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51203	Soybean	cytosol, mitochondrion, peroxisome	97.31	97.31
KRH14066	Soybean	endoplasmic reticulum, nucleus	79.95	80.34
KRH74050	Soybean	endoplasmic reticulum	79.46	79.85
PGSC0003DMT400050843	Potato	cytosol, peroxisome, plastid	79.71	79.32
Solyc04g015100.2.1	Tomato	cytosol, peroxisome, plastid	79.71	79.32
AT5G47720.4	Thale cress	cytosol, peroxisome, plastid	80.44	79.28
CDY25950	Canola	cytosol	78.48	77.35
CDY41065	Canola	cytosol, peroxisome, plastid	78.0	76.87
VIT_00s0531g00050.t01	Wine grape	peroxisome	82.15	76.36
Bra017469.1-P	Field mustard	plastid	78.0	73.84
KRH49796	Soybean	endoplasmic reticulum	33.5	30.79
KRG89223	Soybean	mitochondrion	32.52	29.89
KRG90241	Soybean	nucleus	32.27	28.63
KRH33469	Soybean	endoplasmic reticulum, nucleus	31.54	27.86

Protein Annotations

EntrezGene:100780213	Gene3D:3.40.47.10	MapMan:9.1.1.1	EMBL:ACUP02010293	EnsemblPlantsGene:GLYMA_17G005300	GO:GO:0003674
GO:GO:0003824	GO:GO:0003985	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006629	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	UniProt:I1MQX3	InterPro:IPR016039
EnsemblPlants:KRH01946	ProteinID:KRH01946	ProteinID:KRH01946.1	PFAM:PF00108	PFAM:PF02803	PIRSF:PIRSF000429
ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR18919	PANTHER:PTHR18919:SF131	SUPFAM:SSF53901	TIGRFAMs:TIGR01930
InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N
UniParc:UPI0001BA8560	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:492754..497665

Molecular Weight (calculated)

42356.3 Da

IEP (calculated)

8.383

GRAVY (calculated)

0.195

Length

409 amino acids

Sequence
(BLAST)

001: MSTCVKSRDV CIVGVARTPI GGLLGTLSSL SATELGSIAI KTALKRANVD PSLVQEVFFG NVLSANLGQA PARQAALGAG IPTSVICTTI NKVCASGMKA
101: TMLAALTIQF GLNDVVVAGG MESMSNAPKY IAEARKGSRY GHDTIIDGMV KDGLWDVYNN FGMGVCAELC ADQHVITRDE QDSYAIRSFE RGISAQNAGH
201: FAWEIVPVEV STGRGRASKI VDKDEGLGKF DAAKLRKLRP SFKEVGGSVT AGNASSISDG AAALVLVSEE KARELGLHVI AKIKGYGDAA KAPELFTTAP
301: SLAIPKAISN AGLDASQIDY YEINEAFSVV ALANQKLLGL DPEKVNAHGG AVSLGHPLGC SGARILVTLL GVLRQKRGKY GVAAICNGGG GASALVLELM
401: PVAVGRSLL

Best Arabidopsis Sequence Match ( AT5G47720.4 )
(BLAST)

001: MAPPVSDDSL QPRDVCVVGV ARTPIGDFLG SLSSLTATRL GSIAIQAALK RAHVDPALVE EVFFGNVLTA NLGQAPARQA ALGAGIPYSV ICTTINKVCA
101: AGMKSVMLAS QSIQLGLNDI VVAGGMESMS NVPKYLPDAR RGSRLGHDTV VDGMMKDGLW DVYNDFGMGV CGEICADQYR ITREEQDAYA IQSFERGIAA
201: QNTQLFAWEI VPVEVSTGRG RPSVVIDKDE GLGKFDAAKL KKLRPSFKED GGSVTAGNAS SISDGAAALV LVSGEKALEL GLHVIAKIRG YADAAQAPEL
301: FTTTPALAIP KAIKRAGLDA SQVDYYEINE AFSVVALANQ KLLGLDPERL NAHGGAVSLG HPLGCSGARI LVTLLGVLRA KKGKYGVASI CNGGGGASAL
401: VLEFMSEKTI GYSAL

Arabidopsis Description

Probable acetyl-CoA acetyltransferase, cytosolic 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIK7]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.