Factsheet for PGSC0003DMT400050843

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	peroxisome
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015100.2.1	Tomato	cytosol, peroxisome, plastid	99.27	99.27
KRH01946	Soybean	nucleus	79.32	79.71
KRH51203	Soybean	cytosol, mitochondrion, peroxisome	79.08	79.46
PGSC0003DMT400028289	Potato	cytosol	77.13	78.47
PGSC0003DMT400044777	Potato	cytosol	76.89	78.22
AT5G47720.4	Thale cress	cytosol, peroxisome, plastid	78.83	78.07
CDY25950	Canola	cytosol	77.13	76.39
CDY41065	Canola	cytosol, peroxisome, plastid	77.13	76.39
VIT_00s0531g00050.t01	Wine grape	peroxisome	78.83	73.64
Bra017469.1-P	Field mustard	plastid	76.4	72.69
PGSC0003DMT400076175	Potato	cytosol	34.06	30.11
PGSC0003DMT400040876	Potato	cytosol	33.33	30.04

Protein Annotations

Gene3D:3.40.47.10	MapMan:9.1.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003985	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:M1BQZ2
PFAM:PF00108	PFAM:PF02803	EnsemblPlantsGene:PGSC0003DMG400019748	PGSC:PGSC0003DMG400019748	EnsemblPlants:PGSC0003DMT400050843	PIRSF:PIRSF000429
ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR18919	PANTHER:PTHR18919:SF131	SUPFAM:SSF53901	TIGRFAMs:TIGR01930
InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N
UniParc:UPI000295CADC	SEG:seg	:	:	:	:

Description

Peroxisomal acetoacetyl-coenzyme A thiolase [Source:PGSC_GENE;Acc:PGSC0003DMG400019748]

Coordinates

chr4:+:9260205..9265546

Molecular Weight (calculated)

42540.4 Da

IEP (calculated)

8.469

GRAVY (calculated)

0.180

Length

411 amino acids

Sequence
(BLAST)

001: MVQDSIKLQD VCIVGVARTP MGGFLGSLSS LSATELGSAA IRAALKRANV DPSLVQEVFF GNVLSANLGQ APARQAALGA GIPNSVICTT INKVCSSGLK
101: ATMIAAQTIQ SGANDIVVTG GMESMSNVPK YLAQARKGSR LGHDTVVDGM LKDGLWDVYN DFGMGVCAEL CADQYKITRE EQDSYAIQSF ERGIAAQRSG
201: AFAWEIVPVE ISGGRGRPSS IVDKDEGLIK FDASKLRKLR PSFKENGGSV TAGNASIISD GAAALVLVSG QKAIELGLQV IGRIRGFADA AQAPELFPTA
301: PALAIPKAIK NSGLESSQID YYEINEAFSV VALANQRLLN LNSGKLNAHG GAVSLGHPLG CSGARILVTL LGVLKQKNAK FGVAGVCNGG GGASALVVEF
401: MPVGMVARSS L

Best Arabidopsis Sequence Match ( AT5G47720.4 )
(BLAST)

001: MAPPVSDDSL QPRDVCVVGV ARTPIGDFLG SLSSLTATRL GSIAIQAALK RAHVDPALVE EVFFGNVLTA NLGQAPARQA ALGAGIPYSV ICTTINKVCA
101: AGMKSVMLAS QSIQLGLNDI VVAGGMESMS NVPKYLPDAR RGSRLGHDTV VDGMMKDGLW DVYNDFGMGV CGEICADQYR ITREEQDAYA IQSFERGIAA
201: QNTQLFAWEI VPVEVSTGRG RPSVVIDKDE GLGKFDAAKL KKLRPSFKED GGSVTAGNAS SISDGAAALV LVSGEKALEL GLHVIAKIRG YADAAQAPEL
301: FTTTPALAIP KAIKRAGLDA SQVDYYEINE AFSVVALANQ KLLGLDPERL NAHGGAVSLG HPLGCSGARI LVTLLGVLRA KKGKYGVASI CNGGGGASAL
401: VLEFMSEKTI GYSAL

Arabidopsis Description

Probable acetyl-CoA acetyltransferase, cytosolic 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIK7]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.