CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 3
plastid 4
peroxisome 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14066	Soybean	endoplasmic reticulum, nucleus	98.77	98.77
Bra020710.1-P	Field mustard	cytosol, plastid	85.5	86.35
CDY19963	Canola	plastid	84.77	85.61
CDY48742	Canola	plastid	84.77	85.61
AT5G48230.2	Thale cress	cytosol	84.52	85.36
CDY00071	Canola	plastid	84.52	85.36
Solyc07g045350.2.1	Tomato	extracellular, plastid, unclear	84.52	85.15
PGSC0003DMT400044777	Potato	cytosol	84.28	84.9
VIT_12s0057g01200.t01	Wine grape	cytosol	86.49	84.82
PGSC0003DMT400028289	Potato	cytosol	84.03	84.65
Solyc05g017760.2.1	Tomato	plastid, unclear	82.56	82.56
Bra037501.1-P	Field mustard	mitochondrion, plastid	84.28	80.71
GSMUA_Achr1P16400_001	Banana	mitochondrion	75.43	80.58
TraesCS5B01G166200.2	Wheat	cytosol, mitochondrion, peroxisome	78.62	80.4
Os09t0252100-01	Rice	plastid	79.12	80.3
TraesCS2B01G049200.1	Wheat	golgi	78.87	80.05
Bra036182.1-P	Field mustard	plastid	84.77	80.05
CDX85319	Canola	mitochondrion	83.54	80.0
TraesCS5A01G169400.1	Wheat	cytosol, mitochondrion, peroxisome	78.13	79.9
TraesCS5D01G173800.1	Wheat	cytosol	78.13	79.9
TraesCS2A01G036300.1	Wheat	cytosol, mitochondrion, peroxisome	78.62	79.8
TraesCS2D01G035400.2	Wheat	cytosol	78.62	79.8
CDX86320	Canola	mitochondrion	83.05	79.53
KRH01946	Soybean	nucleus	79.85	79.46
KRH51203	Soybean	cytosol, mitochondrion, peroxisome	79.85	79.46
KXG24143	Sorghum	cytosol	78.13	79.3
GSMUA_Achr1P09500_001	Banana	cytosol, peroxisome, plastid	78.13	79.3
Zm00001d031212_P004	Maize	cytosol, peroxisome, plastid	77.4	78.55
KXG39211	Sorghum	cytosol, peroxisome, plastid	77.15	78.3
Zm00001d047224_P003	Maize	cytosol	70.02	78.08
HORVU5Hr1G052090.10	Barley	endoplasmic reticulum, vacuole	78.13	77.37
GSMUA_Achr1P19180_001	Banana	peroxisome	77.64	76.89
KXG32103	Sorghum	cytosol	76.17	73.63
Os01t0110400-01	Rice	cytosol	74.69	73.08
Zm00001d029416_P001	Maize	peroxisome	76.9	70.65
HORVU2Hr1G005420.1	Barley	mitochondrion, peroxisome, plastid	55.53	70.19
TraesCS3B01G008700.1	Wheat	cytosol	71.99	70.1
TraesCS3D01G005500.1	Wheat	cytosol	71.99	70.1
TraesCS3A01G003800.1	Wheat	cytosol	71.74	69.86
Zm00001d008432_P003	Maize	mitochondrion	75.18	67.11
CDY05693	Canola	cytosol, mitochondrion, peroxisome	49.88	62.08
HORVU3Hr1G000760.3	Barley	peroxisome	60.69	57.58
KRH49796	Soybean	endoplasmic reticulum	33.42	30.56
KRG89223	Soybean	mitochondrion	32.92	30.11
KRG90241	Soybean	nucleus	33.66	29.72
KRH33469	Soybean	endoplasmic reticulum, nucleus	32.68	28.73

Protein Annotations

EntrezGene:100804647	Gene3D:3.40.47.10	MapMan:9.1.1.1	EMBL:ACUP02001294	EnsemblPlantsGene:GLYMA_02G308500	GO:GO:0003674
GO:GO:0003824	GO:GO:0003985	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0006629	GO:GO:0006635	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	UniProt:I1JJT8	InterPro:IPR016039
EnsemblPlants:KRH74050	ProteinID:KRH74050	ProteinID:KRH74050.1	PFAM:PF00108	PFAM:PF02803	PIRSF:PIRSF000429
ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR18919	PANTHER:PTHR18919:SF131	SUPFAM:SSF53901	TIGRFAMs:TIGR01930
InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N
UniParc:UPI0002337773	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:48224472..48228309

Molecular Weight (calculated)

41586.1 Da

IEP (calculated)

6.517

GRAVY (calculated)

0.205

Length

407 amino acids

Sequence
(BLAST)

001: MAPVAAASSD SIKPRDVCIV GVARTPMGGF LGTLSSLSAT KLGSIAIEAA LKRANVDPSL VEEVFFGNVL SANLGQAPAR QAALGAGISN SVICTTVNKV
101: CASGMKAAML AAQSIQLSIN DVVVAGGMES MSNVPKYLAE ARKGSRLGHD SLVDGMLKDG LWDVYKDVGM GVCAELCADN HALTRDDQDN YAVQSFERGI
201: AAQESGAFSW EIAPVEVSGG RGRPSTVVDK DEGLGKFDAA KLRKLRPSFK ETGGSVTAGN ASSISDGAAA LVLVSGEKAL KLGLQVIAKI TGYADAAQEP
301: ELFTTAPSLA IPKAIAKAGL ETSQIDFYEI NEAFAVVALA NQKLLGLNSE KVNLHGGAVA LGHPLGCSGA RILVTLLGVL KQKNGKYGVG GICNGGGGAS
401: ALVVELL

Best Arabidopsis Sequence Match ( AT5G48230.2 )
(BLAST)

001: MAHTSESVNP RDVCIVGVAR TPMGGFLGSL SSLPATKLGS LAIAAALKRA NVDPALVQEV VFGNVLSANL GQAPARQAAL GAGIPNSVIC TTVNKVCASG
101: MKAVMIAAQS IQLGINDVVV AGGMESMSNT PKYLAEARKG SRFGHDSLVD GMLKDGLWDV YNDCGMGSCA ELCAEKFQIT REQQDDYAVQ SFERGIAAQE
201: AGAFTWEIVP VEVSGGRGRP STIVDKDEGL GKFDAAKLRK LRPSFKENGG TVTAGNASSI SDGAAALVLV SGEKALQLGL LVLAKIKGYG DAAQEPEFFT
301: TAPALAIPKA IAHAGLESSQ VDYYEINEAF AVVALANQKL LGIAPEKVNV NGGAVSLGHP LGCSGARILI TLLGILKKRN GKYGVGGVCN GGGGASALVL
401: ELL

Arabidopsis Description

AAT1AT5G48230 protein [Source:UniProtKB/TrEMBL;Acc:B9DGQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.