Subcellular Localization
min:
: max
Winner_takes_all: unclear, plastid, extracellular
Predictor Summary:
Predictor Summary:
- cytosol 3
- peroxisome 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plastid:
20363867
unclear: 26455813 extracellular: 29876421 |
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400044777 | Potato | cytosol | 99.5 | 99.5 |
| Solyc05g017760.2.1 | Tomato | plastid, unclear | 86.63 | 86.0 |
| KRH74050 | Soybean | endoplasmic reticulum | 85.15 | 84.52 |
| KRH14066 | Soybean | endoplasmic reticulum, nucleus | 85.15 | 84.52 |
| VIT_12s0057g01200.t01 | Wine grape | cytosol | 86.14 | 83.86 |
| CDY19963 | Canola | plastid | 83.42 | 83.62 |
| CDY00071 | Canola | plastid | 83.17 | 83.37 |
| CDY48742 | Canola | plastid | 82.92 | 83.13 |
| Bra020710.1-P | Field mustard | cytosol, plastid | 82.67 | 82.88 |
| AT5G48230.2 | Thale cress | cytosol | 82.67 | 82.88 |
| TraesCS5B01G166200.2 | Wheat | cytosol, mitochondrion, peroxisome | 78.71 | 79.9 |
| TraesCS2B01G049200.1 | Wheat | golgi | 79.21 | 79.8 |
| TraesCS2A01G036300.1 | Wheat | cytosol, mitochondrion, peroxisome | 79.21 | 79.8 |
| GSMUA_Achr1P16400_001 | Banana | mitochondrion | 75.25 | 79.79 |
| GSMUA_Achr1P09500_001 | Banana | cytosol, peroxisome, plastid | 78.96 | 79.55 |
| Os09t0252100-01 | Rice | plastid | 78.96 | 79.55 |
| TraesCS5D01G173800.1 | Wheat | cytosol | 78.22 | 79.4 |
| TraesCS5A01G169400.1 | Wheat | cytosol, mitochondrion, peroxisome | 78.22 | 79.4 |
| TraesCS2D01G035400.2 | Wheat | cytosol | 78.71 | 79.3 |
| Bra037501.1-P | Field mustard | mitochondrion, plastid | 82.92 | 78.82 |
| CDX85319 | Canola | mitochondrion | 82.67 | 78.59 |
| Bra036182.1-P | Field mustard | plastid | 83.42 | 78.19 |
| Zm00001d031212_P004 | Maize | cytosol, peroxisome, plastid | 77.48 | 78.05 |
| KXG24143 | Sorghum | cytosol | 77.48 | 78.05 |
| CDX86320 | Canola | mitochondrion | 81.93 | 77.88 |
| KXG39211 | Sorghum | cytosol, peroxisome, plastid | 76.49 | 77.06 |
| HORVU5Hr1G052090.10 | Barley | endoplasmic reticulum, vacuole | 78.22 | 76.89 |
| Solyc04g015100.2.1 | Tomato | cytosol, peroxisome, plastid | 78.22 | 76.89 |
| GSMUA_Achr1P19180_001 | Banana | peroxisome | 77.97 | 76.64 |
| Zm00001d047224_P003 | Maize | cytosol | 69.06 | 76.44 |
| KXG32103 | Sorghum | cytosol | 75.5 | 72.45 |
| Os01t0110400-01 | Rice | cytosol | 73.27 | 71.15 |
| TraesCS3B01G008700.1 | Wheat | cytosol | 73.51 | 71.05 |
| TraesCS3D01G005500.1 | Wheat | cytosol | 73.51 | 71.05 |
| TraesCS3A01G003800.1 | Wheat | cytosol | 73.27 | 70.81 |
| HORVU2Hr1G005420.1 | Barley | mitochondrion, peroxisome, plastid | 56.19 | 70.5 |
| Zm00001d029416_P001 | Maize | peroxisome | 75.99 | 69.3 |
| Zm00001d008432_P003 | Maize | mitochondrion | 74.75 | 66.23 |
| CDY05693 | Canola | cytosol, mitochondrion, peroxisome | 50.0 | 61.77 |
| HORVU3Hr1G000760.3 | Barley | peroxisome | 61.39 | 57.81 |
| Solyc09g061840.2.1 | Tomato | cytosol | 34.41 | 30.48 |
| Solyc09g091470.2.1 | Tomato | plastid | 34.65 | 30.11 |
Protein Annotations
| Gene3D:3.40.47.10 | MapMan:9.1.1.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003985 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0006629 | GO:GO:0006635 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016740 | GO:GO:0016746 |
| GO:GO:0016747 | InterPro:IPR016039 | UniProt:K4CEU2 | PFAM:PF00108 | PFAM:PF02803 | PIRSF:PIRSF000429 |
| ScanProsite:PS00099 | ScanProsite:PS00737 | PANTHER:PTHR18919 | PANTHER:PTHR18919:SF131 | SUPFAM:SSF53901 | EnsemblPlantsGene:Solyc07g045350.2 |
| EnsemblPlants:Solyc07g045350.2.1 | TIGRFAMs:TIGR01930 | InterPro:Thiolase | InterPro:Thiolase-like | InterPro:Thiolase_AS | InterPro:Thiolase_C |
| InterPro:Thiolase_CS | InterPro:Thiolase_N | UniParc:UPI000276CA16 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr7:-:58449147..58455665
Molecular Weight (calculated)
41314.9 Da
IEP (calculated)
6.887
GRAVY (calculated)
0.156
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPAAADTIK PRDVCIVGVA RTPMGGFLGS LSSLPATKLG SIAIEGALKK ANVDPSLVEE VFFGNVLSAN LGQAPARQAA LGAGLPNTVV CTTVNKVCAS
101: GLKATMLAAQ SIQLGINEVV VAGGMESMSN VPKYIAEARK GSRLGHDSLV DGMLKDGLTD VYKDCGMGVC AETCASNHKI TREEQDDYAV QSFERGIAAQ
201: EAGAFAWEIV PVEVPGGRGK PSIIVDKDDG LGKFDGAKLR KLRPSFKDKD GTVTAGNASS ISDGAAALVL VSGEKAIKLG LNVIGKISGY ADAAQEPELF
301: TTAPALAIPK AIKSASLEAS QIDYYEINEA FAVVSLANQK LLGLNPEKVN VHGGAVSLGH PLGCSGARIL VTLLGVLRQK NGKYGAAGVC NGGGGASALV
401: LELV
101: GLKATMLAAQ SIQLGINEVV VAGGMESMSN VPKYIAEARK GSRLGHDSLV DGMLKDGLTD VYKDCGMGVC AETCASNHKI TREEQDDYAV QSFERGIAAQ
201: EAGAFAWEIV PVEVPGGRGK PSIIVDKDDG LGKFDGAKLR KLRPSFKDKD GTVTAGNASS ISDGAAALVL VSGEKAIKLG LNVIGKISGY ADAAQEPELF
301: TTAPALAIPK AIKSASLEAS QIDYYEINEA FAVVSLANQK LLGLNPEKVN VHGGAVSLGH PLGCSGARIL VTLLGVLRQK NGKYGAAGVC NGGGGASALV
401: LELV
001: MAHTSESVNP RDVCIVGVAR TPMGGFLGSL SSLPATKLGS LAIAAALKRA NVDPALVQEV VFGNVLSANL GQAPARQAAL GAGIPNSVIC TTVNKVCASG
101: MKAVMIAAQS IQLGINDVVV AGGMESMSNT PKYLAEARKG SRFGHDSLVD GMLKDGLWDV YNDCGMGSCA ELCAEKFQIT REQQDDYAVQ SFERGIAAQE
201: AGAFTWEIVP VEVSGGRGRP STIVDKDEGL GKFDAAKLRK LRPSFKENGG TVTAGNASSI SDGAAALVLV SGEKALQLGL LVLAKIKGYG DAAQEPEFFT
301: TAPALAIPKA IAHAGLESSQ VDYYEINEAF AVVALANQKL LGIAPEKVNV NGGAVSLGHP LGCSGARILI TLLGILKKRN GKYGVGGVCN GGGGASALVL
401: ELL
101: MKAVMIAAQS IQLGINDVVV AGGMESMSNT PKYLAEARKG SRFGHDSLVD GMLKDGLWDV YNDCGMGSCA ELCAEKFQIT REQQDDYAVQ SFERGIAAQE
201: AGAFTWEIVP VEVSGGRGRP STIVDKDEGL GKFDAAKLRK LRPSFKENGG TVTAGNASSI SDGAAALVLV SGEKALQLGL LVLAKIKGYG DAAQEPEFFT
301: TAPALAIPKA IAHAGLESSQ VDYYEINEAF AVVALANQKL LGIAPEKVNV NGGAVSLGHP LGCSGARILI TLLGILKKRN GKYGVGGVCN GGGGASALVL
401: ELL
Arabidopsis Description
AAT1AT5G48230 protein [Source:UniProtKB/TrEMBL;Acc:B9DGQ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.