Factsheet for Solyc05g017760.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

cytosol 3
peroxisome 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028289	Potato	cytosol	94.59	95.3
Solyc07g045350.2.1	Tomato	extracellular, plastid, unclear	86.0	86.63
KRH74050	Soybean	endoplasmic reticulum	82.56	82.56
KRH14066	Soybean	endoplasmic reticulum, nucleus	82.56	82.56
AT5G48230.2	Thale cress	cytosol	81.33	82.13
CDY19963	Canola	plastid	80.59	81.39
CDY00071	Canola	plastid	80.34	81.14
CDY48742	Canola	plastid	80.34	81.14
Bra020710.1-P	Field mustard	cytosol, plastid	80.1	80.89
VIT_12s0057g01200.t01	Wine grape	cytosol	81.33	79.76
GSMUA_Achr1P16400_001	Banana	mitochondrion	74.45	79.53
TraesCS5B01G166200.2	Wheat	cytosol, mitochondrion, peroxisome	77.4	79.15
TraesCS5A01G169400.1	Wheat	cytosol, mitochondrion, peroxisome	76.9	78.64
TraesCS2B01G049200.1	Wheat	golgi	77.4	78.55
KXG24143	Sorghum	cytosol	77.4	78.55
Os09t0252100-01	Rice	plastid	77.4	78.55
TraesCS2D01G035400.2	Wheat	cytosol	77.15	78.3
Zm00001d031212_P004	Maize	cytosol, peroxisome, plastid	77.15	78.3
TraesCS5D01G173800.1	Wheat	cytosol	76.41	78.14
Zm00001d047224_P003	Maize	cytosol	70.02	78.08
GSMUA_Achr1P09500_001	Banana	cytosol, peroxisome, plastid	76.9	78.05
TraesCS2A01G036300.1	Wheat	cytosol, mitochondrion, peroxisome	76.66	77.81
KXG39211	Sorghum	cytosol, peroxisome, plastid	76.41	77.56
Bra037501.1-P	Field mustard	mitochondrion, plastid	80.59	77.18
CDX86320	Canola	mitochondrion	80.59	77.18
CDX85319	Canola	mitochondrion	80.1	76.71
GSMUA_Achr1P19180_001	Banana	peroxisome	76.9	76.16
Bra036182.1-P	Field mustard	plastid	80.59	76.1
HORVU5Hr1G052090.10	Barley	endoplasmic reticulum, vacuole	76.66	75.91
Solyc04g015100.2.1	Tomato	cytosol, peroxisome, plastid	75.92	75.18
TraesCS3D01G005500.1	Wheat	cytosol	73.22	71.29
TraesCS3B01G008700.1	Wheat	cytosol	73.22	71.29
TraesCS3A01G003800.1	Wheat	cytosol	72.97	71.05
KXG32103	Sorghum	cytosol	72.48	70.07
Zm00001d029416_P001	Maize	peroxisome	75.68	69.53
Os01t0110400-01	Rice	cytosol	71.01	69.47
HORVU2Hr1G005420.1	Barley	mitochondrion, peroxisome, plastid	54.79	69.25
Zm00001d008432_P003	Maize	mitochondrion	72.73	64.91
CDY05693	Canola	cytosol, mitochondrion, peroxisome	48.16	59.94
HORVU3Hr1G000760.3	Barley	peroxisome	60.2	57.11
Solyc09g091470.2.1	Tomato	plastid	33.17	29.03
Solyc09g061840.2.1	Tomato	cytosol	32.43	28.95

Protein Annotations

Gene3D:3.40.47.10	MapMan:9.1.1.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003985	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0006629	GO:GO:0006635
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016740	GO:GO:0016746
GO:GO:0016747	InterPro:IPR016039	UniProt:K4BZ35	PFAM:PF00108	PFAM:PF02803	PIRSF:PIRSF000429
ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR18919	PANTHER:PTHR18919:SF131	SUPFAM:SSF53901	EnsemblPlantsGene:Solyc05g017760.2
EnsemblPlants:Solyc05g017760.2.1	TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C
InterPro:Thiolase_CS	InterPro:Thiolase_N	UniParc:UPI000276702E	SEG:seg	:	:

Description

No Description!

Coordinates

chr5:+:18312063..18317108

Molecular Weight (calculated)

41778.4 Da

IEP (calculated)

6.163

GRAVY (calculated)

0.113

Length

407 amino acids

Sequence
(BLAST)

001: MAPATAESIK PRGPQDICVV GVARTPMGGF LGSLSSVSAT KLGSIAIAGA IKRANIDPAL VEEVFFGNVL SANLGQAPAR QAALGAGIPN TVICTTVNKV
101: CASGMKATML AAQSIQLGIN DVVVAGGMEN MSNVPKYFAE ARKGSRLGHD SLVDGMLKDG LTDVYNDCGM GVCAEICAEN HKITREDQDN FAVQSFERGI
201: AAQEAGAFTW EIVPVEVPGG RGKPSTIVDK DEGPGKFDGA KLRKLRPSFK EKDGTVTAGN ASSISDGAAA LVLVSGEKAV KLGLDVIAKI SGYADAAQEP
301: ELFTISPAKA IPKAIKSAGL EESQIDYYEI NEAFAVVALA NQKLLGLNPE KINVHGGAVS LGHPLGCSGA RILVTLLGVL RQKDGKYGAA GVCNGGGGAS
401: ALVVELM

Best Arabidopsis Sequence Match ( AT5G48230.2 )
(BLAST)

001: MAHTSESVNP RDVCIVGVAR TPMGGFLGSL SSLPATKLGS LAIAAALKRA NVDPALVQEV VFGNVLSANL GQAPARQAAL GAGIPNSVIC TTVNKVCASG
101: MKAVMIAAQS IQLGINDVVV AGGMESMSNT PKYLAEARKG SRFGHDSLVD GMLKDGLWDV YNDCGMGSCA ELCAEKFQIT REQQDDYAVQ SFERGIAAQE
201: AGAFTWEIVP VEVSGGRGRP STIVDKDEGL GKFDAAKLRK LRPSFKENGG TVTAGNASSI SDGAAALVLV SGEKALQLGL LVLAKIKGYG DAAQEPEFFT
301: TAPALAIPKA IAHAGLESSQ VDYYEINEAF AVVALANQKL LGIAPEKVNV NGGAVSLGHP LGCSGARILI TLLGILKKRN GKYGVGGVCN GGGGASALVL
401: ELL

Arabidopsis Description

AAT1AT5G48230 protein [Source:UniProtKB/TrEMBL;Acc:B9DGQ1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.