Factsheet for Solyc09g091470.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
peroxisome 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33150.1	Solyc10g005650.2.1	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076175	Potato	cytosol	99.35	99.35
VIT_05s0051g00720.t01	Wine grape	cytosol	89.03	89.8
AT2G33150.1	Thale cress	cytosol	86.45	87.01
CDY19452	Canola	cytosol	85.59	85.96
Bra005522.1-P	Field mustard	cytosol	85.16	85.71
CDY17140	Canola	cytosol	85.16	85.71
Bra022927.1-P	Field mustard	cytosol	84.3	85.22
CDY37750	Canola	mitochondrion	84.52	85.06
CDY23766	Canola	cytosol	84.3	84.85
Bra021829.1-P	Field mustard	cytosol	84.3	84.85
CDX84701	Canola	cytosol	84.3	84.85
CDX79511	Canola	cytosol	84.09	84.63
KRH33469	Soybean	endoplasmic reticulum, nucleus	84.09	84.45
KRG90241	Soybean	nucleus	83.23	83.95
AT1G04710.1	Thale cress	cytosol	79.57	83.52
CDX86611	Canola	cytosol	80.86	83.37
Bra030586.1-P	Field mustard	mitochondrion	79.78	82.26
CDY15520	Canola	mitochondrion	79.14	81.6
Solyc09g061840.2.1	Tomato	cytosol	79.35	80.92
Solyc07g045350.2.1	Tomato	extracellular, plastid, unclear	30.11	34.65
Solyc04g015100.2.1	Tomato	cytosol, peroxisome, plastid	30.11	34.06
Solyc05g017760.2.1	Tomato	plastid, unclear	29.03	33.17

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	InterPro:IPR016039	UniProt:K4CWH3	PFAM:PF00108
PFAM:PF02803	ScanProsite:PS00098	ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4
SUPFAM:SSF53901	EnsemblPlantsGene:Solyc09g091470.2	EnsemblPlants:Solyc09g091470.2.1	TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like
InterPro:Thiolase_AS	InterPro:Thiolase_C	InterPro:Thiolase_CS	InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS	UniParc:UPI000276B3AC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:70742778..70747795

Molecular Weight (calculated)

49027.0 Da

IEP (calculated)

7.905

GRAVY (calculated)

-0.023

Length

465 amino acids

Sequence
(BLAST)

001: MDKAIERQRV LLQHLRPSQT SSSLENIESS ISASVCSAGD SAAYQRTSVF GDDVVIVAAY RTPLCKAKRG GFKDTYPDDI LAAVLKAVIE KTNVNPSEVG
101: DIVVGSVLAP GSQRASECRM AAFYAGFPET VPIRTVNRQC SSGLQAVADV AAAIKAGFYD IGIGAGLESM TTNPMAWEGS VNPKVKSMVQ AQDCLLPMGI
201: TSENVAHRFG VTRQEQDQAA VDSHRKAAAA TASGKFKDEI IPVATKIVDP KTGDEKPVTI SVDDGIRPNA SVSDLAKLKP VFKKSGTTTA GNSSQVTDGA
301: GAVLLMKRSI AMQKGLPILG VFRTFAAVGV DPAIMGIGPA VAIPAAVKSA GLELEDIDLF EINEAFASQF VYCRKKLELD PEKINVNGGA MAIGHPLGAT
401: GARCVATLLH EMKRRGKDCR FGVVSMCIGT GMGAAAVFER GDSCDELRNA RKIDSHNHLL SKDAL

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.