CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
peroxisome 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY11941
CDY20736
CDY36789
CDY49390
CDY66434
CDY66435
CDY67858

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G33150.1	CDY11941	AT5G56290.1	24879895
AT2G33150.1	CDY20736	AT5G56290.1	24879895
AT2G33150.1	CDY36789	AT5G56290.1	24879895
AT2G33150.1	CDY49390	AT5G56290.1	24879895
AT2G33150.1	CDY66434	AT5G56290.1	24879895
AT2G33150.1	CDY66435	AT5G56290.1	24879895
AT2G33150.1	CDY67858	AT5G56290.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005522.1-P	Field mustard	cytosol	100.0	100.0
CDY19452	Canola	cytosol	99.57	99.35
CDX84701	Canola	cytosol	97.62	97.62
CDX79511	Canola	cytosol	97.4	97.4
CDY23766	Canola	cytosol	96.54	96.54
AT2G33150.1	Thale cress	cytosol	96.54	96.54
CDY37750	Canola	mitochondrion	95.89	95.89
CDX86611	Canola	cytosol	85.06	87.14
VIT_05s0051g00720.t01	Wine grape	cytosol	86.15	86.33
CDY15520	Canola	mitochondrion	83.98	86.03
PGSC0003DMT400076175	Potato	cytosol	85.71	85.16
Solyc09g091470.2.1	Tomato	plastid	85.71	85.16
KRH33469	Soybean	endoplasmic reticulum, nucleus	84.42	84.23
KRG90241	Soybean	nucleus	83.77	83.95
CDY33940	Canola	cytosol	67.53	68.42
CDY05657	Canola	cytosol	66.88	66.88
CDY19963	Canola	plastid	30.09	34.49
CDY00071	Canola	plastid	30.09	34.49
CDY48742	Canola	plastid	29.65	33.99
CDX85319	Canola	mitochondrion	30.52	33.18
CDX86320	Canola	mitochondrion	29.87	32.47
CDY25950	Canola	cytosol	28.57	31.81
CDY41065	Canola	cytosol, peroxisome, plastid	28.57	31.81
CDY05693	Canola	cytosol, mitochondrion, peroxisome	21.21	29.97
CDY05692	Canola	cytosol, plastid	9.96	21.0

Protein Annotations

Gene3D:3.40.47.10	MapMan:5.7.3.2.3	GO:A0A078FRM0	UniProt:A0A078FRM0	EnsemblPlants:CDY17140	ProteinID:CDY17140
ProteinID:CDY17140.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0003988	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	GO:GO:0016747	EnsemblPlantsGene:GSBRNA2T00095199001	InterPro:IPR016039	PFAM:PF00108
PFAM:PF02803	ScanProsite:PS00098	ScanProsite:PS00099	ScanProsite:PS00737	PANTHER:PTHR43853	PANTHER:PTHR43853:SF4
SUPFAM:SSF53901	TIGRFAMs:TIGR01930	InterPro:Thiolase	InterPro:Thiolase-like	InterPro:Thiolase_AS	InterPro:Thiolase_C
InterPro:Thiolase_CS	InterPro:Thiolase_N	InterPro:Thiolase_acyl_enz_int_AS	UniParc:UPI00025474E1	SEG:seg	:

Description

BnaA05g10480DBnaA05g10480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FRM0]

Coordinates

chrLK032071:-:103547..106694

Molecular Weight (calculated)

48567.2 Da

IEP (calculated)

8.319

GRAVY (calculated)

-0.060

Length

462 amino acids

Sequence
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHSFEGSLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT ALCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSDVGDI
101: VVGTVLAPGS QRASECRMSA FYAGFPETVP VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFEQAQ NCLLPMGVTS
201: ENVAQRFGVS RQDQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ATLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMRRSVAT QKGLPVLGVF RTFAAVGVDP AIMGVGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDAE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VESHGLLSKD AR

Best Arabidopsis Sequence Match ( AT2G33150.1 )
(BLAST)

001: MEKAIERQRV LLEHLRPSSS SSHNYEASLS ASACLAGDSA AYQRTSLYGD DVVIVAAHRT PLCKSKRGNF KDTYPDDLLA PVLRALIEKT NLNPSEVGDI
101: VVGTVLAPGS QRASECRMAA FYAGFPETVA VRTVNRQCSS GLQAVADVAA AIKAGFYDIG IGAGLESMTT NPMAWEGSVN PAVKKFAQAQ NCLLPMGVTS
201: ENVAQRFGVS RQEQDQAAVD SHRKAAAATA AGKFKDEIIP VKTKLVDPKT GDEKPITVSV DDGIRPTTTL ASLGKLKPVF KKDGTTTAGN SSQVSDGAGA
301: VLLMKRSVAM QKGLPVLGVF RTFAAVGVDP AIMGIGPAVA IPAAVKAAGL ELDDIDLFEI NEAFASQFVY CRNKLGLDPE KINVNGGAMA IGHPLGATGA
401: RCVATLLHEM KRRGKDCRFG VVSMCIGTGM GAAAVFERGD GVDELRNARK VEAQGLLSKD AR

Arabidopsis Description

PED1PKT3 [Source:UniProtKB/TrEMBL;Acc:A0A178VRP9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.