CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79533
CDX80638
CDX84682
CDX86151
CDX88648
CDY02778
CDY11841
CDY17182
CDY19499
CDY28975
CDY32739
CDY32958
CDY36555
CDY39641
CDY40577
CDY43605
CDY51271
CDY57462

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	CDX79533	AT2G33520.1	21798944
AT5G56290.1	CDX84682	AT2G33520.1	21798944
AT5G56290.1	CDY17182	AT2G33520.1	21798944
AT5G56290.1	CDY19499	AT2G33520.1	21798944
AT5G56290.1	CDY28975	AT3G01910.1	21798944
AT5G56290.1	CDY36555	AT3G01910.1	21798944
AT5G56290.1	CDY39641	AT3G01910.1	21798944
AT5G56290.1	CDY40577	AT3G01910.1	21798944
AT5G56290.1	CDX80638	AT5G27600.1	16256065
AT5G56290.1	CDX86151	AT5G27600.1	16256065
AT5G56290.1	CDY32958	AT5G43280.1	24879895
AT5G56290.1	CDY43605	AT5G43280.1	24879895
AT5G56290.1	CDX88648	AT5G57910.1	21798944
AT5G56290.1	CDY02778	AT5G57910.1	21798944
AT5G56290.1	CDY11841	AT5G57910.1	21798944
AT5G56290.1	CDY32739	AT5G57910.1	21798944
AT5G56290.1	CDY51271	AT5G57910.1	21798944
AT5G56290.1	CDY57462	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra035613.1-P	Field mustard	extracellular, mitochondrion	89.06	48.31
CDY66435	Canola	cytosol	45.31	25.0
CDY67858	Canola	cytosol	45.31	13.12
CDY11941	Canola	plastid	48.44	4.25
AT5G56290.1	Thale cress	plastid	46.88	4.12
CDY36789	Canola	plastid	48.44	4.11
CDY49390	Canola	plastid	43.75	4.02
EES15431	Sorghum	plastid	42.19	3.68
Os08t0500100-02	Rice	cytosol	42.19	3.67
Zm00001d031327_P009	Maize	plastid	42.19	3.65
GSMUA_Achr7P20310_001	Banana	plastid	42.19	3.56
HORVU7Hr1G049220.10	Barley	plastid	40.62	3.48
TraesCS7A01G241500.5	Wheat	cytosol, plastid	40.62	3.48
TraesCS7B01G137000.2	Wheat	cytosol, plastid	40.62	3.48
TraesCS7D01G240500.3	Wheat	cytosol, plastid	40.62	3.47
TraesCS6A01G105000.1	Wheat	plastid	25.0	2.26
Zm00001d052851_P002	Maize	plastid	21.88	1.82
CDY66434	Canola	cytosol, nucleus, plastid	1.56	0.35
CDY69423	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY20736	EnsemblPlantsGene:GSBRNA2T00012954001	ProteinID:CDY20736	ProteinID:CDY20736.1	UniParc:UPI0004EDB190	UniProt:A0A078G5K2
MapMan:35.2	:	:	:	:	:

Description

BnaA02g08760DBnaA02g08760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5K2]

Coordinates

chrLK032111:+:360870..361148

Molecular Weight (calculated)

7402.0 Da

IEP (calculated)

4.902

GRAVY (calculated)

0.011

Length

64 amino acids

Sequence
(BLAST)

1: MLLIVTWDVQ RINTLLCSCA WQYLRLSLSC ASRQDLIEAC EARNLDVLQE EPSVSSREAM RFKP

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.