CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11941	Canola	plastid	91.24	54.25
CDY36789	Canola	plastid	91.47	52.58
CDY49390	Canola	plastid	84.1	52.37
VIT_19s0015g01940.t01	Wine grape	plastid	63.59	37.5
CDY66434	Canola	cytosol, nucleus, plastid	23.5	36.04
PGSC0003DMT400029209	Potato	cytosol, plastid	60.37	35.22
Solyc10g005650.2.1	Tomato	plastid	59.91	34.95
KRH62568	Soybean	plastid	58.29	34.28
KRH56371	Soybean	plastid	57.83	34.1
GSMUA_Achr7P20310_001	Banana	plastid	55.53	31.79
EES15431	Sorghum	plastid	48.39	28.61
Zm00001d031327_P009	Maize	plastid	48.62	28.51
Os08t0500100-02	Rice	cytosol	47.0	27.72
TraesCS7B01G137000.2	Wheat	cytosol, plastid	47.7	27.67
TraesCS7A01G241500.5	Wheat	cytosol, plastid	47.7	27.67
HORVU7Hr1G049220.10	Barley	plastid	47.7	27.67
TraesCS6A01G105000.1	Wheat	plastid	44.93	27.5
Zm00001d052851_P002	Maize	plastid	48.62	27.44
TraesCS7D01G240500.3	Wheat	cytosol, plastid	45.85	26.57
CDY67858	Canola	cytosol	0.0	0.0
CDY66435	Canola	cytosol	0.0	0.0
CDY20736	Canola	extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:CDY69423	EnsemblPlantsGene:GSBRNA2T00087743001	InterPro:PTS1R_family	PANTHER:PTHR10130	PANTHER:PTHR10130:SF0	ProteinID:CDY69423
ProteinID:CDY69423.1	SEG:seg	UniParc:UPI0004EF2C96	UniProt:A0A078JPC0	MapMan:23.4.1.1.1	:

Description

BnaA10g29080DBnaA10g29080D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JPC0]

Coordinates

chrLK039397:+:784..4021

Molecular Weight (calculated)

47629.9 Da

IEP (calculated)

4.431

GRAVY (calculated)

-0.674

Length

434 amino acids

Sequence
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAT RSGPGRPQFY SQDQHLTSLP GSELDQPVLQ PGAQGAEFFR GFSSVDQNGL
101: GAAWDEVQRG GPMPPMGPMY EPVHPTFEGP PQRVLSNFLH SFVESSRGGI PFRPPPVPVL GLSQSDKQCI RDRSSIMARH FFADRGEEFI NSQVNALLSS
201: LEIDDGIQAR GHIPGGFREL GNFWNESQAV TKPGLHPADG WAAEFNQHGM DHGGPDGWVQ SFEQQHGVNG WATEFEQGQS QLMSNQMRNM DMQNLAAMEQ
301: TRKLAHTLSQ DGNPKFQNSK FLQFVSKMSR GELIIDENQV KPGSAPGEWA TEYEQQYLGP PSWADQFANE KLSHGPEQWA DEFASGRGQQ ESAEDQWVNE
401: FSKLNVDDWV DEFAEGPLGE SSADAWANAY DEYV

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.