CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79533
CDX80638
CDX84682
CDX86151
CDX88648
CDY02778
CDY11841
CDY17182
CDY19499
CDY28975
CDY32739
CDY32958
CDY36555
CDY39641
CDY40577
CDY43605
CDY51271
CDY57462

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	CDX79533	AT2G33520.1	21798944
AT5G56290.1	CDX84682	AT2G33520.1	21798944
AT5G56290.1	CDY17182	AT2G33520.1	21798944
AT5G56290.1	CDY19499	AT2G33520.1	21798944
AT5G56290.1	CDY28975	AT3G01910.1	21798944
AT5G56290.1	CDY36555	AT3G01910.1	21798944
AT5G56290.1	CDY39641	AT3G01910.1	21798944
AT5G56290.1	CDY40577	AT3G01910.1	21798944
AT5G56290.1	CDX80638	AT5G27600.1	16256065
AT5G56290.1	CDX86151	AT5G27600.1	16256065
AT5G56290.1	CDY32958	AT5G43280.1	24879895
AT5G56290.1	CDY43605	AT5G43280.1	24879895
AT5G56290.1	CDX88648	AT5G57910.1	21798944
AT5G56290.1	CDY02778	AT5G57910.1	21798944
AT5G56290.1	CDY11841	AT5G57910.1	21798944
AT5G56290.1	CDY32739	AT5G57910.1	21798944
AT5G56290.1	CDY51271	AT5G57910.1	21798944
AT5G56290.1	CDY57462	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20736	Canola	extracellular	25.0	45.31
CDY67858	Canola	cytosol	75.0	39.37
CDY11941	Canola	plastid	82.76	13.15
CDY49390	Canola	plastid	78.45	13.06
AT5G56290.1	Thale cress	plastid	81.9	13.05
CDY36789	Canola	plastid	82.76	12.72
EES15431	Sorghum	plastid	73.28	11.58
Os08t0500100-02	Rice	cytosol	73.28	11.55
Zm00001d031327_P009	Maize	plastid	73.28	11.49
GSMUA_Achr7P20310_001	Banana	plastid	73.28	11.21
HORVU7Hr1G049220.10	Barley	plastid	70.69	10.96
TraesCS7A01G241500.5	Wheat	cytosol, plastid	70.69	10.96
TraesCS7B01G137000.2	Wheat	cytosol, plastid	70.69	10.96
TraesCS7D01G240500.3	Wheat	cytosol, plastid	70.69	10.95
Zm00001d052851_P002	Maize	plastid	57.76	8.71
TraesCS6A01G105000.1	Wheat	plastid	47.41	7.76
CDY66434	Canola	cytosol, nucleus, plastid	6.03	2.47
CDY69423	Canola	plastid	0.0	0.0

Protein Annotations

EnsemblPlants:CDY66435	EnsemblPlantsGene:GSBRNA2T00053618001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:PTS1R_family	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR10130
PANTHER:PTHR10130:SF0	PFAM:PF13414	PFscan:PS50293	ProteinID:CDY66435	ProteinID:CDY66435.1	SUPFAM:SSF48452
UniParc:UPI0004EE180F	UniProt:A0A078JIZ7	MapMan:23.4.1.1.1	:	:	:

Description

BnaC02g12360DBnaC02g12360D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIZ7]

Coordinates

chrLK035262:+:4067..5416

Molecular Weight (calculated)

13280.0 Da

IEP (calculated)

9.364

GRAVY (calculated)

-0.150

Length

116 amino acids

Sequence
(BLAST)

001: MTYFFLFNRI IRFGISLVQQ ANSVQSADAI SAYQQALDLK PNYVRALANM GISYANQDRG MYKESIPYYV RALAMNPKAD NAWQYLRLSL SCASRQNLIQ
101: ACEARNLDVL QKEFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.