Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY32739 | Canola | nucleus | 90.26 | 91.19 |
| Bra020404.1-P | Field mustard | nucleus | 89.23 | 85.29 |
| CDX88648 | Canola | nucleus | 72.31 | 66.51 |
| CDY11841 | Canola | nucleus | 71.79 | 65.73 |
| AT5G57910.1 | Thale cress | nucleus | 69.74 | 65.7 |
| CDY51271 | Canola | nucleus | 65.13 | 65.46 |
| CDY57462 | Canola | nucleus | 65.64 | 63.68 |
| CDX68674 | Canola | nucleus | 37.95 | 35.58 |
| CDY28197 | Canola | nucleus | 37.44 | 35.27 |
| CDY39225 | Canola | nucleus | 35.38 | 34.5 |
| KRH03036 | Soybean | nucleus | 40.51 | 30.74 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 36.92 | 30.51 |
| KRH72318 | Soybean | cytosol | 38.97 | 29.34 |
| Solyc12g009970.1.1 | Tomato | nucleus | 34.36 | 22.64 |
| Solyc07g005690.2.1 | Tomato | cytosol | 33.33 | 21.81 |
| PGSC0003DMT400020258 | Potato | nucleus | 31.79 | 21.02 |
| PGSC0003DMT400028944 | Potato | cytosol | 32.31 | 21.0 |
Protein Annotations
| EnsemblPlants:CDY02778 | EnsemblPlantsGene:GSBRNA2T00114950001 | ncoils:Coil | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | ProteinID:CDY02778 |
| ProteinID:CDY02778.1 | SEG:seg | UniParc:UPI0004EBCBD2 | MapMan:35.2 | : | : |
Description
BnaC02g11110D
Coordinates
chrLK031937:-:390853..392089
Molecular Weight (calculated)
22560.8 Da
IEP (calculated)
10.153
GRAVY (calculated)
-1.134
Length
195 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNPAHGNFN CNPVEDPKVR FRHHSLLQDY QELHMDTEAM RKRLETMQER KATLMAEVRF LRRRYRHLRQ DQPVKKVRGR SNGGKKSKTQ LVRVEVSPNK
101: TSGAETKHVS LPDLNHSGEA HHDETKTKKV PLFDLNQISG EEEEEMNNSE ERMRVEQSSA CKRMSSIEML SCRNGGDGSH KRKSSWQDPV AALRV
101: TSGAETKHVS LPDLNHSGEA HHDETKTKKV PLFDLNQISG EEEEEMNNSE ERMRVEQSSA CKRMSSIEML SCRNGGDGSH KRKSSWQDPV AALRV
001: MNPTHGDFTP LNSNHFEDPK VRFRHHSLMQ DYGELHMETE AMRKRLQAVR ERKATLMAEV RFLRRRYRHL RQDQPQEIKK VRRSNGGKKI RVEVSPSNKS
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
101: EAETKHVSLP DLNHSEKAHD ETKTSPKRRV PLFDLNQISG EEEQETEAVD NNQENTRVEE SNSCKRLMIS SIEMQQKDVK PSSCRNGGNG SNKRKISWQD
201: PVAALRV
Arabidopsis Description
At5g57910 [Source:UniProtKB/TrEMBL;Acc:Q8GW24]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.