Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra011204.1-P | Field mustard | nucleus | 100.0 | 100.0 |
| CDX68674 | Canola | nucleus | 91.3 | 90.87 |
| CDY39225 | Canola | nucleus | 64.25 | 66.5 |
| AT4G30630.1 | Thale cress | nucleus | 57.49 | 50.21 |
| CDY51271 | Canola | nucleus | 36.23 | 38.66 |
| CDY32739 | Canola | nucleus | 35.75 | 38.34 |
| CDY57462 | Canola | nucleus | 36.72 | 37.81 |
| CDY02778 | Canola | nucleus | 35.27 | 37.44 |
| CDX88648 | Canola | nucleus | 37.68 | 36.79 |
| CDY11841 | Canola | nucleus | 36.72 | 35.68 |
| VIT_11s0037g00390.t01 | Wine grape | nucleus | 40.1 | 35.17 |
| KRH72318 | Soybean | cytosol | 36.72 | 29.34 |
| KRH03036 | Soybean | nucleus | 36.23 | 29.18 |
| Solyc12g009970.1.1 | Tomato | nucleus | 38.65 | 27.03 |
| PGSC0003DMT400020258 | Potato | nucleus | 37.68 | 26.44 |
| Solyc07g005690.2.1 | Tomato | cytosol | 35.75 | 24.83 |
| PGSC0003DMT400028944 | Potato | cytosol | 34.78 | 24.0 |
Protein Annotations
| EnsemblPlants:CDY28197 | EnsemblPlantsGene:GSBRNA2T00039918001 | ncoils:Coil | PANTHER:PTHR34807 | PANTHER:PTHR34807:SF3 | ProteinID:CDY28197 |
| ProteinID:CDY28197.1 | SEG:seg | UniParc:UPI0002546D94 | UniProt:A0A078GSS2 | MapMan:35.2 | : |
Description
BnaA01g06520DBnaA01g06520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GSS2]
Coordinates
chrLK032216:+:226498..227843
Molecular Weight (calculated)
23871.6 Da
IEP (calculated)
9.875
GRAVY (calculated)
-0.927
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MKEITDSVDP RIMFKHQSLL QDYHELRKET EFKMRKLEVM KQRRSNLDAE VRFLRRRYKH LKQEQTLETS SPNLLRLSES GDVKVPSKRK SSSLREKEEL
101: ALEKNSKRRR GDEFLTDSSP LPDLNGGGST FKVPAFDLNK ISREEEEPEA NGGQVVVEAT KKAMLGSGND DLRCEMKLPI CRDVEKELNR AAVKRKVSWQ
201: DPVALSV
101: ALEKNSKRRR GDEFLTDSSP LPDLNGGGST FKVPAFDLNK ISREEEEPEA NGGQVVVEAT KKAMLGSGND DLRCEMKLPI CRDVEKELNR AAVKRKVSWQ
201: DPVALSV
001: MKKTNFVSSA SGGDPMIRLT FVQVLELEKE LEIKRKRLEM IKQKRLTLKS EVRFLRRRYE HLKQDQTLET SPEMLRLSES GGLEVPRKPS GERKKQSGVR
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV
Arabidopsis Description
At4g30630 [Source:UniProtKB/TrEMBL;Acc:Q9M097]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.