Factsheet for Solyc07g005690.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1
Solyc08g022030.2.1
Solyc08g066070.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G57910.1	Solyc08g066070.1.1	AT1G07000.1	21798944
AT5G57910.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT5G57910.1	Solyc08g022030.2.1	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028944	Potato	cytosol	89.6	89.0
Solyc12g009970.1.1	Tomato	nucleus	45.97	46.28
VIT_11s0037g00390.t01	Wine grape	nucleus	34.9	44.07
KRH72318	Soybean	cytosol	33.89	39.0
KRH03036	Soybean	nucleus	33.56	38.91
Bra002685.1-P	Field mustard	nucleus	24.16	37.11
CDY51271	Canola	nucleus	24.16	37.11
CDY57462	Canola	nucleus	24.5	36.32
CDX68674	Canola	nucleus	25.17	36.06
Bra024058.1-P	Field mustard	nucleus	24.5	35.96
Bra011204.1-P	Field mustard	nucleus	24.83	35.75
CDY28197	Canola	nucleus	24.83	35.75
CDY39225	Canola	nucleus	23.83	35.5
Bra006793.1-P	Field mustard	mitochondrion, nucleus	19.46	35.37
CDY11841	Canola	nucleus	25.17	35.21
CDX88648	Canola	nucleus	24.83	34.91
AT5G57910.1	Thale cress	nucleus	24.16	34.78
Bra041159.1-P	Field mustard	cytosol	15.1	34.35
CDY02778	Canola	nucleus	21.81	33.33
CDY32739	Canola	nucleus	21.48	33.16
Bra020404.1-P	Field mustard	nucleus	22.15	32.35
AT4G30630.1	Thale cress	nucleus	22.15	27.85

Protein Annotations

EnsemblPlants:Solyc07g005690.2.1	EnsemblPlantsGene:Solyc07g005690.2	ncoils:Coil	PANTHER:PTHR34807	PANTHER:PTHR34807:SF3	UniParc:UPI000276BFC3
UniProt:K4CB40	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr7:+:573797..576970

Molecular Weight (calculated)

34333.2 Da

IEP (calculated)

9.993

GRAVY (calculated)

-0.709

Length

298 amino acids

Sequence
(BLAST)

001: MKRVALESSP YVVFEENNAR LKHQTLLQDY LELHKDTNDT RNKLEDMKMR KQKLLAEVHF LRRRHKYLLQ MKSSGHLEQQ ERAALLNTEL YGINGMNDRF
101: HSKKEVKQHK LPPLPRLKQK ARIQVAKEAS LQRTPSDILV NHKQALLIGK DAVHRSTVSS GLKHQSRVYS GKEMLLQNAA PVFDLNQNDR SFAGNGFVLR
201: STIPVFDLNQ ETDYVGKDVV LPSRVPVIDL NEISIGEEEP QANFEPLNFE EPKRGLIQNI NDDQHRDLKL SICRNVGEGT SHVEKRKISW QDPVALRV

Best Arabidopsis Sequence Match ( AT4G30630.1 )
(BLAST)

001: MKKTNFVSSA SGGDPMIRLT FVQVLELEKE LEIKRKRLEM IKQKRLTLKS EVRFLRRRYE HLKQDQTLET SPEMLRLSES GGLEVPRKPS GERKKQSGVR
101: ASVPCFDLKL KNTICNEKEA LANNVASCDL DKKRKRSRGS DVLTFPVSLP DLNGEGNTSG TDKVPGFDLN QISREEEEPE VNGEHMVAEA MKNAMLDNRI
201: SDLHVERKLP ICGDVEKELN RAVKRKVTWQ DPVALSV

Arabidopsis Description

At4g30630 [Source:UniProtKB/TrEMBL;Acc:Q9M097]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.