Factsheet for Solyc08g022030.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008730.2.1
Solyc01g103220.2.1
Solyc02g084990.2.1
Solyc02g088000.2.1
Solyc03g113660.2.1
Solyc04g007230.2.1
Solyc06g009270.2.1
Solyc06g065650.2.1
Solyc06g071250.2.1
Solyc06g082510.2.1
Solyc07g006580.2.1
Solyc07g062080.2.1
Solyc09g015180.2.1
Solyc09g076050.2.1
Solyc10g007500.2.1
Solyc11g010680.2.1
Solyc11g013370.1.1
Solyc11g042420.1.1
Solyc11g064950.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32190.1	Solyc06g082510.2.1	AT1G15720.1	21798944
AT4G32190.1	Solyc03g113660.2.1	AT1G19010.1	21798944
AT4G32190.1	Solyc06g071250.2.1	AT1G19010.1	21798944
AT4G32190.1	Solyc01g103220.2.1	AT1G22840.1	21798944
AT4G32190.1	Solyc11g042420.1.1	AT1G22840.1	21798944
AT4G32190.1	Solyc04g007230.2.1	AT1G25420.1	21798944
AT4G32190.1	Solyc07g062080.2.1	AT1G53510.1	21798944
AT4G32190.1	Solyc10g007500.2.1	AT1G53510.1	21798944
AT4G32190.1	Solyc06g009270.2.1	AT2G18730.1	21798944
AT4G32190.1	Solyc07g006580.2.1	AT2G18730.1	21798944
AT4G32190.1	Solyc11g013370.1.1	AT2G44950.1	21798944
AT4G32190.1	Solyc02g088000.2.1	AT3G01180.1	21798944
AT4G32190.1	Solyc09g015180.2.1	AT3G08780.1	21798944
AT4G32190.1	Solyc09g076050.2.1	AT3G22440.1	21798944
AT4G32190.1	Solyc09g076050.2.1	AT4G14900.1	21798944
AT4G32190.1	Solyc06g065650.2.1	AT4G32570.1	21798944
AT4G32190.1	Solyc01g008730.2.1	AT5G06960.1	21798944
AT4G32190.1	Solyc11g064950.1.1	AT5G06960.1	21798944
AT4G32190.1	Solyc11g010680.2.1	AT5G65495.1	21798944
AT4G32190.1	Solyc02g084990.2.1	AT5G66460.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010993	Potato	plastid	92.86	92.86
VIT_04s0008g05610.t01	Wine grape	plastid	55.32	55.04
CDX81488	Canola	cytosol, nucleus, plastid	10.52	52.94
KRH15859	Soybean	endoplasmic reticulum, vacuole	47.4	50.84
KRH05183	Soybean	plastid	49.48	49.87
CDX68825	Canola	plastid	43.64	44.62
Bra011328.1-P	Field mustard	plastid	43.38	44.36
CDX75227	Canola	plastid	43.38	44.36
AT4G32190.1	Thale cress	plastid	44.68	43.93
CDX81489	Canola	nucleus	8.57	41.77
CDX81487	Canola	cytosol	11.3	39.01
CDY61791	Canola	nucleus	7.66	38.06
CDY61790	Canola	endoplasmic reticulum, extracellular	18.05	36.77
TraesCS6A01G180500.1	Wheat	plastid	32.21	32.08
TraesCS6D01G164600.1	Wheat	plastid	32.21	32.08
Zm00001d053726_P001	Maize	plastid	32.08	32.04
EES06399	Sorghum	plastid	31.95	31.78
HORVU6Hr1G036020.1	Barley	plastid	31.82	31.65
Os02t0186400-01	Rice	plastid	31.04	31.32
CDY02356	Canola	cytosol	6.1	28.48
Bra023156.1-P	Field mustard	cytosol	6.1	28.48
GSMUA_AchrUn_...	Banana	mitochondrion	5.97	20.26
Bra030239.1-P	Field mustard	nucleus	8.7	12.43
CDY35289	Canola	nucleus	5.97	12.3
CDX95298	Canola	nucleus	8.57	6.64

Protein Annotations

MapMan:3.2.1.3	ncoils:Coil	GO:GO:0000003	GO:GO:0000795	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0007049	GO:GO:0007131
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	UniProt:K4CJM3	PANTHER:PTHR23160
PANTHER:PTHR23160:SF11	EnsemblPlantsGene:Solyc08g022030.2	EnsemblPlants:Solyc08g022030.2.1	UniParc:UPI000276BA8C	SEG:seg	:

Description

No Description!

Coordinates

chr8:+:33749293..33753678

Molecular Weight (calculated)

89220.6 Da

IEP (calculated)

4.663

GRAVY (calculated)

-0.688

Length

770 amino acids

Sequence
(BLAST)

001: MALRALPRAT LSFSFLWQPK ECCFMRLEWK KRLMLMTAYH GRGPSSRIVR SVLDNRKSNI TGEEETEPAR VLLERLFAQT QKLEQQIGRN IYFPQVAELG
101: LNLGKLESDL LDALAALKKK EDDIQDTERK VLMEYNELNR AKIELEQRVE EMEAANSRQE KLENELRQAN LVLVSQAAEI EDLKFRFNEI DQEISAAQIA
201: LVSKEDEINK MMIELKNKCD EAAKTESQLR TKGELLDTAN EVVQRQEVEL QNLRREIQEK EKELQVFLTM QKTEDEKLKV SKSNLEKQAM DWLIAKQEMK
301: KLEEETSKYG GGANRSLEDF RRVKKLLADV RSELVSSQRA LTSSRKKMEE QENLLENRLE ELEEQRKSVM SYMTSLKEAQ NEVENEKMQL TVAEARNKEL
401: ERDLSMEKEL VEELQTENNI KKSSLYVAIN EKSALQEELD RKSAEFGETQ NLLQVTESEL VDARLEIQHL KSQCASLQLM LEEKNKELLD SRKTLDELNQ
501: EIAELRVLMN SQEQQLIQAT SMLKEKEEFM QIMQLELNDT KKKYLEAETV VEQMVDLTNK LVISVKDDVL SSLSHTDEMW SSQLMEKPTD TFRWHKNHLE
601: NELELTRESL RSREMDSLAA QRALKLKEQE LKIVRQKLND REEEINKMKE MTQDADGVRQ LYALAQERTG EKSTGYLAVE KLQFERAQLE VEAATSALRK
701: LAEFSRGLLN RASLTIEADY DSSLWLVDIP ETAANVSSSF ECLAEVYTEM TQLSALSEKL VKEAGILCPQ

Best Arabidopsis Sequence Match ( AT4G32190.1 )
(BLAST)

001: MGFSQAIRLN LASFSSPSPC DYCLTRVVNH KQKSLVAFPS ITRRKRHLLL SVQSVLHNTR PNINDNGSAE SANVLFDKLF ARTHRLERQT NQHSVYPDDD
101: DLPYSNLGVL ESDLEAALVA LLKREEDLHD AERKLLSDKN KLNRAKEELE KREKTISEAS LKHESLQEEL KRANVELASQ AREIEELKHK LRERDEERAA
201: LQSSLTLKEE ELEKMRQEIA NRSKEVSMAI SEFESKSQLL SKANEVVKRQ EGEIYALQRA LEEKEEELEI SKATKKLEQE KLRETEANLK KQTEEWLIAQ
301: DEVNKLKEET VKRLGEANET MEDFMKVKKL LTDVRFELIS SREALVFSRE QMEEKELLLE KQLEELEEQR KSVLSYMQSL RDAHTEVESE RVKLRVVEAK
401: NFALEREISV QKELLEDLRE ELQKEKPLLE LAMHDISVIQ DELYKKANAF QVSQNLLQEK ESSLVEAKLE IQHLKSEQAS LELLLQEKDE ELAEARNKLG
501: EVNQEVTELK ALMISREDQL MEATEMLKEK DVHLHRIEGE LGSSKLKVTE AEMVVERIAE LTNRLLMSTT NGQNQNAMRI NNEISIDSMQ QPLEKPHDDY
601: GMENKRLVME LSFTRENLRM KEMEVLAVQR ALTFKDEEIN VVMGRLEAKE QELKKLKEET INDSEDLKVL YALAQERVGE KTMGDLAIEM LQLEAANLEV
701: EAATSALQKL AKMSTELLTQ ADMSIEADTT HTVMPERGYS EGSNECLGEV KTEVVRLWSL TEKLLENAGI VAGTSTCMEG VIL

Arabidopsis Description

Myosin heavy chain-related protein [Source:UniProtKB/TrEMBL;Acc:Q8H1E5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.