Factsheet for Solyc04g007230.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052541_P001	Maize	extracellular	30.34	68.06
VIT_01s0011g03610.t01	Wine grape	mitochondrion	65.33	64.13
KRG90825	Soybean	mitochondrion	62.54	62.35
KRH35947	Soybean	mitochondrion	62.23	62.04
Bra012478.1-P	Field mustard	mitochondrion	58.51	58.51
CDY58595	Canola	mitochondrion	58.51	58.51
Os01t0687700-01	Rice	mitochondrion, plasma membrane	57.28	57.99
CDY53122	Canola	mitochondrion	57.89	57.89
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	56.66	57.37
TraesCS3A01G263500.1	Wheat	mitochondrion, plastid	56.66	57.37
KXG33152	Sorghum	mitochondrion	56.66	57.01
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	56.04	56.74
AT1G25420.1	Thale cress	mitochondrion	56.66	56.66
Zm00001d043813_P001	Maize	mitochondrion	56.04	56.39
GSMUA_Achr3P29510_001	Banana	mitochondrion	55.42	54.91
GSMUA_Achr9P21370_001	Banana	mitochondrion	55.11	54.43
KXG19452	Sorghum	mitochondrion	45.82	53.82
HORVU3Hr1G063860.1	Barley	plastid	56.35	50.14
Solyc02g085830.2.1	Tomato	mitochondrion	19.81	30.77
Solyc04g072560.2.1	Tomato	nucleus, unclear	43.65	26.7
Solyc02g083130.2.1	Tomato	plastid	38.39	22.84
Solyc05g009550.2.1	Tomato	mitochondrion	28.48	21.55
Solyc06g066690.2.1	Tomato	nucleus	17.03	17.8
Solyc03g120120.2.1	Tomato	nucleus	22.91	15.55
Solyc12g010700.1.1	Tomato	cytosol	20.43	14.57
Solyc12g043150.1.1	Tomato	nucleus	21.36	13.53
Solyc07g032230.2.1	Tomato	nucleus	37.46	11.28
Solyc07g022860.2.1	Tomato	nucleus	13.62	7.99
Solyc07g054230.2.1	Tomato	nucleus	3.1	2.23

Protein Annotations

EnsemblPlants:Solyc04g007230.2.1	EnsemblPlantsGene:Solyc04g007230.2	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF28	PFAM:PF03398	SEG:seg	UniParc:UPI00027667D2
UniProt:K4BNN0	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr4:-:925300..931499

Molecular Weight (calculated)

35632.5 Da

IEP (calculated)

7.875

GRAVY (calculated)

-0.358

Length

323 amino acids

Sequence
(BLAST)

001: MSMLNQLFNR GLQGSKCKTC LTLAISRIKL LQNKRDAQLR LMRKEIAQFL QTGQEAIARI RVEHIIREQN VWAAYEILEL FCEFVFARVP ILESQKECPS
101: ELREAVASII FAAPRCSDLP DLLHVRNLFA AKYGKEFIAA ASELRPDTSV NRTIVEKLSV GAPSAELKLN VLKEIAKEYN VEWDSSYTEA ELSKNPEDLL
201: NGPKQIAAPV RASLEPNTRG HPPTSENPVT SPNGNRGAKS LDSPTSVTKA PLWPANIDKP SHSDSTLADA VDIKKDTRPE TSDVLERARS AISAAERASA
301: AARLAADLVN VKFSSSKIEE DKS

Best Arabidopsis Sequence Match ( AT1G25420.1 )
(BLAST)

001: MSLLNQLFNR GIFGAKCKTS LNLAIARMKL LQNKRDMQLK HMKKEIAHFL QAGQEPIARI RVEHVIREMN LWAAYEILEL FCEFILARVP ILESEKECPR
101: ELREAIASII FAAPRCSEVP DLLQIKNLFG TKYGKEFIMV ASELRPDSGV NRTIIEKLSP TSPSGAARLK MLKEIAQEYS LNWDSSATEA EFMKSHEDLL
201: GGAKQIHRQD GISESRPSQQ GYGQSSVSRE VESLPAEATQ RFQKLQAQNP VSKSMPSSKL TSAFQAPPDT RRNQTDVMEI ARAALASADR ATAAARAAAQ
301: LVNVSYGATT PTVAAEGKPL NLM

Arabidopsis Description

At1g25420/F2J7_16 [Source:UniProtKB/TrEMBL;Acc:Q9C6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.