Factsheet for Solyc02g083130.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003908	Potato	plastid	81.77	90.8
VIT_00s1235g00010.t01	Wine grape	mitochondrion	42.91	66.95
CDY69937	Canola	plastid	43.65	57.11
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	37.75	56.79
Bra010522.1-P	Field mustard	plastid	43.46	56.06
KRH69704	Soybean	mitochondrion	44.94	55.71
KRH07948	Soybean	mitochondrion	45.12	55.56
CDX75521	Canola	plastid	43.83	54.97
Bra011633.1-P	Field mustard	mitochondrion, plastid	43.83	54.71
CDY41639	Canola	plastid	43.09	54.42
CDX69159	Canola	plastid	43.65	53.86
AT4G35730.1	Thale cress	plastid	44.75	52.15
Os09t0547200-01	Rice	mitochondrion	37.57	42.86
GSMUA_Achr3P26880_001	Banana	mitochondrion	34.07	42.82
EER99304	Sorghum	plastid	37.57	42.5
TraesCS5D01G353300.1	Wheat	mitochondrion	35.91	40.46
TraesCS5B01G347800.1	Wheat	mitochondrion	35.91	40.29
TraesCS5A01G346800.1	Wheat	plastid	35.73	40.0
Zm00001d021453_P002	Maize	plastid	37.75	39.2
Solyc04g007230.2.1	Tomato	mitochondrion	22.84	38.39
HORVU5Hr1G086370.1	Barley	nucleus, plastid	37.57	37.36
Solyc04g072560.2.1	Tomato	nucleus, unclear	29.47	30.3
Solyc02g085830.2.1	Tomato	mitochondrion	11.42	29.81
Solyc06g066690.2.1	Tomato	nucleus	13.81	24.27
Solyc05g009550.2.1	Tomato	mitochondrion	18.97	24.12
Solyc03g120120.2.1	Tomato	nucleus	16.21	18.49
Solyc12g010700.1.1	Tomato	cytosol	14.73	17.66
Solyc12g043150.1.1	Tomato	nucleus	16.57	17.65
Solyc07g032230.2.1	Tomato	nucleus	27.26	13.79
Solyc07g022860.2.1	Tomato	nucleus	10.68	10.53
Solyc07g054230.2.1	Tomato	nucleus	6.08	7.35

Protein Annotations

EnsemblPlants:Solyc02g083130.2.1	EnsemblPlantsGene:Solyc02g083130.2	Gene3D:1.20.1260.60	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1
ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF19	PFAM:PF03398	SEG:seg	UniParc:UPI00027682DE
UniProt:K4BAI1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2:+:46640618..46644160

Molecular Weight (calculated)

60766.4 Da

IEP (calculated)

9.033

GRAVY (calculated)

-0.583

Length

543 amino acids

Sequence
(BLAST)

001: MGSSLRPLQT NATSLVKQRL FCLCRSSLRA GPTNTATSST FDIIIFLLSS QTKRPLHIQL CSLLHYHSHT HSSHRFTLSL SFNKKMTVAN AATKHCKKAM
101: KMGLSLFCRT FNSSKCKTMA KMTVARIKLL RNKREVVVRQ MRRDIAMLLE SHQDATARIR VEHVIREQNI LQANEILELF CELIVARLTI IAKQKQCPAD
201: LKEGISSLIF AAPRCSDIPE LMGIKDVFEK KYGKDFVSAA TDLRPNAGVN RTLIEKLSVK TPSGEVKLKI MKEIAKEYQV EWDTADSEME LLKPPEERIE
301: GPNGFVSATS LPLKPASKQP AEPNNLRSSS DDGESEVAKF DDPASAAKAA AESAKQAIAA AEAAAYLAPK FSQIEVAPPS QSIVDLYDMH WSSKNIRNSE
401: NSHSSAGEEM PLDMKRSQKF DRRHSYNVPS SNRNVQYDDS DCDEEIEMED PPSGTYKPSP PTDIDGGKFY RRHSYNVPSV HSGIKFDESD GEEEMGTHEF
501: SRGTNRAPNR PAPHVPRVHP NLPDYDKLTA RFESLKSQKS RRT

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.