Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75521 | Canola | plastid | 81.12 | 87.3 |
| Bra011633.1-P | Field mustard | mitochondrion, plastid | 81.12 | 86.9 |
| CDX69159 | Canola | plastid | 81.33 | 86.14 |
| CDY69937 | Canola | plastid | 74.68 | 83.86 |
| Bra010522.1-P | Field mustard | plastid | 75.54 | 83.61 |
| CDY41639 | Canola | plastid | 76.61 | 83.02 |
| VIT_00s1235g00010.t01 | Wine grape | mitochondrion | 48.5 | 64.94 |
| KRH07948 | Soybean | mitochondrion | 55.58 | 58.73 |
| KRH69704 | Soybean | mitochondrion | 55.15 | 58.68 |
| VIT_00s0302g00010.t01 | Wine grape | endoplasmic reticulum | 43.13 | 55.68 |
| PGSC0003DMT400003908 | Potato | plastid | 52.58 | 50.1 |
| Solyc02g083130.2.1 | Tomato | plastid | 52.15 | 44.75 |
| Os09t0547200-01 | Rice | mitochondrion | 42.27 | 41.39 |
| EER99304 | Sorghum | plastid | 42.06 | 40.83 |
| GSMUA_Achr3P26880_001 | Banana | mitochondrion | 36.91 | 39.81 |
| TraesCS5D01G353300.1 | Wheat | mitochondrion | 40.34 | 39.0 |
| TraesCS5B01G347800.1 | Wheat | mitochondrion | 40.13 | 38.64 |
| TraesCS5A01G346800.1 | Wheat | plastid | 40.13 | 38.56 |
| AT1G25420.1 | Thale cress | mitochondrion | 25.75 | 37.15 |
| Zm00001d021453_P002 | Maize | plastid | 41.42 | 36.9 |
| HORVU5Hr1G086370.1 | Barley | nucleus, plastid | 40.99 | 34.98 |
| AT3G15490.1 | Thale cress | mitochondrion, nucleus | 10.52 | 23.22 |
| AT1G34220.1 | Thale cress | nucleus | 31.33 | 22.5 |
| AT1G79910.1 | Thale cress | nucleus | 17.81 | 21.78 |
| AT1G13340.1 | Thale cress | mitochondrion | 18.67 | 21.27 |
| AT2G14830.1 | Thale cress | mitochondrion | 17.17 | 20.83 |
| AT1G52315.1 | Thale cress | mitochondrion | 15.45 | 20.75 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 29.4 | 14.62 |
| AT4G29440.1 | Thale cress | mitochondrion | 30.69 | 13.12 |
| AT4G32350.1 | Thale cress | nucleus | 19.1 | 12.16 |
| AT1G51900.1 | Thale cress | mitochondrion | 15.88 | 9.56 |
Protein Annotations
| Gene3D:1.20.1260.60 | MapMan:35.2 | EntrezGene:829726 | ProteinID:AEE86554.1 | ArrayExpress:AT4G35730 | EnsemblPlantsGene:AT4G35730 |
| RefSeq:AT4G35730 | TAIR:AT4G35730 | RefSeq:AT4G35730-TAIR-G | EnsemblPlants:AT4G35730.1 | TAIR:AT4G35730.1 | ncoils:Coil |
| UniProt:F4JNS8 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 | RefSeq:NP_195298.2 | PFAM:PF03398 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR12161 | PANTHER:PTHR12161:SF19 | UniParc:UPI00005DC26C | SEG:seg | : | : |
Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
Coordinates
chr4:+:16931003..16933499
Molecular Weight (calculated)
52201.4 Da
IEP (calculated)
8.224
GRAVY (calculated)
-0.741
Length
466 amino acids
Sequence
(BLAST)
(BLAST)
001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.