Factsheet for AT1G51900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22873	Canola	mitochondrion	28.81	62.29
CDY33850	Canola	mitochondrion	28.81	61.43
AT2G14830.1	Thale cress	mitochondrion	18.09	36.46
VIT_12s0059g01700.t01	Wine grape	golgi	9.82	32.62
Solyc12g010700.1.1	Tomato	cytosol	13.7	23.4
PGSC0003DMT400020212	Potato	cytosol	11.63	22.78
KRH70127	Soybean	mitochondrion, nucleus	10.85	22.11
KRH26928	Soybean	nucleus	17.83	20.81
AT3G15490.1	Thale cress	mitochondrion, nucleus	5.56	20.38
KRH22410	Soybean	mitochondrion, nucleus	17.44	20.27
PGSC0003DMT400047266	Potato	nucleus	13.31	18.93
AT1G25420.1	Thale cress	mitochondrion	7.36	17.65
AT1G52315.1	Thale cress	mitochondrion	7.88	17.58
AT1G79910.1	Thale cress	nucleus	8.53	17.32
AT4G35730.1	Thale cress	plastid	9.56	15.88
Solyc07g054230.2.1	Tomato	nucleus	8.79	15.14
AT1G13340.1	Thale cress	mitochondrion	6.85	12.96
AT4G32350.1	Thale cress	nucleus	11.11	11.75
AT1G34220.1	Thale cress	nucleus	7.88	9.4
AT2G19710.1	Thale cress	mitochondrion, nucleus	9.04	7.47
AT4G29440.1	Thale cress	mitochondrion	9.04	6.42

Protein Annotations

Gene3D:1.20.1260.60	MapMan:35.2	EntrezGene:841617	ProteinID:AEE32731.1	ArrayExpress:AT1G51900	EnsemblPlantsGene:AT1G51900
RefSeq:AT1G51900	TAIR:AT1G51900	RefSeq:AT1G51900-TAIR-G	EnsemblPlants:AT1G51900.1	TAIR:AT1G51900.1	Unigene:At.52146
ncoils:Coil	UniProt:F4IB75	GO:GO:0003674	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	RefSeq:NP_175602.1	PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	UniParc:UPI00001630FA
SEG:seg	:	:	:	:	:

Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4IB75]

Coordinates

chr1:-:19279806..19282895

Molecular Weight (calculated)

92202.7 Da

IEP (calculated)

5.021

GRAVY (calculated)

-0.993

Length

774 amino acids

Sequence
(BLAST)

001: MFGFSFSRRR KSNAFTWKVL KQLQSRLMLL KSQKYAKSRH LRADIVDFIR SNDSKSALFR TEQLLLVENA ITIYGFLLKF TDFILLRFSP SKKHSCLLVN
101: DDTSEAVSSL IFASVKCREI PELLIISELV GQRYGQRYVT TAIQVPPGNL VNTEIKEKLK STSVVSETDK CRVMEEIAKE SGYRLEILGL GYKSEIDNEV
201: FDLEEKNVMD ESLHEVYKFC LTDVDERSKK ETSMKDDYIE HKKSTRLLAE NAKKSGHSLE ILRPESKPET EKEVNEEEEK RVMDPDVDIS CYEESPHEVY
301: KFSLTDFEEE IMEDDYREDM KCRMLDDIVK NSGHRVEISR PEYYKPEIEK QVYEKEEKKV MDPDIYIRSY EESPNEVYKF SLTDLEEEIM ENDSIEGVKC
401: RMLDEIMKKS GHHLKISRPE YKPEIEKQVY EEEEKKVMDP DVDIRCYEES PHEVSKFSLT DFEEEIMEDD YIEALKCRML DDILKKSGHR LEISRRQYNK
501: PEIEIQVNEK EEKKVINTDM DIRYDDESPE EVETYSSLTD DEEERSKEDT SMEDVNHKHE VYKFSLTDIK EERSNEDTSM EDCCIEEAQV GKDQRVFRFR
601: ESSEEKRKSS SSPLSPLTEF RDMESLTYYM RQKGMHRRRR RSSTSPHCCH NVVYNEFKVT KEEEEEERQR LTTKRVHSKL HEYEQFLTQF KKKKEEENER
701: RRLSPKDFEP TLPDYDQVIT RFRVLEKEEE ERRRLATKHV HPKLPDYDQI ATKFKLLKEV EKERRRLLTK HSSS

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.