CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22873	Canola	mitochondrion	95.59	96.93
CDX78503	Canola	mitochondrion	43.8	45.17
CDX70491	Canola	mitochondrion	45.45	43.54
VIT_12s0059g01700.t01	Wine grape	golgi	25.9	40.34
AT1G51900.1	Thale cress	mitochondrion	61.43	28.81
CDX87282	Canola	cytosol	15.43	27.72
CDX98558	Canola	plastid	18.73	26.36
CDX97673	Canola	plastid	18.73	26.36
Solyc12g010700.1.1	Tomato	cytosol	32.51	26.05
CDY20110	Canola	nucleus	16.53	25.1
CDY04642	Canola	cytosol	10.19	24.67
CDY21843	Canola	nucleus	16.25	24.08
KRH70127	Soybean	mitochondrion, nucleus	24.79	23.68
PGSC0003DMT400020212	Potato	cytosol	25.34	23.29
CDX93076	Canola	mitochondrion	14.6	21.9
CDX87899	Canola	nucleus	16.53	21.74
CDY49897	Canola	nucleus	15.7	21.27
KRH26928	Soybean	nucleus	38.29	20.97
KRH22410	Soybean	mitochondrion, nucleus	38.02	20.72
CDY52976	Canola	mitochondrion	17.63	20.71
CDY49898	Canola	mitochondrion	14.88	19.71
CDY69937	Canola	plastid	22.31	19.52
CDY37561	Canola	nucleus	19.83	19.1
CDY41108	Canola	nucleus	19.56	18.78
PGSC0003DMT400047266	Potato	nucleus	27.82	18.57
CDY41639	Canola	plastid	21.76	18.37
CDY53122	Canola	mitochondrion	16.25	18.27
CDY58595	Canola	mitochondrion	16.25	18.27
CDY15051	Canola	cytosol	8.82	18.08
CDX75521	Canola	plastid	21.49	18.01
CDX87900	Canola	mitochondrion	14.05	17.71
CDX69159	Canola	plastid	21.21	17.5
CDY19375	Canola	mitochondrion	17.63	15.69
CDY50176	Canola	mitochondrion	16.8	15.48
CDY21093	Canola	mitochondrion	16.53	15.19
CDY48635	Canola	cytosol	11.85	12.84
CDY46461	Canola	cytosol, mitochondrion, nucleus	19.28	12.37
CDX75238	Canola	nucleus	21.49	12.36
Solyc07g054230.2.1	Tomato	nucleus	15.15	12.25
CDX68838	Canola	nucleus	20.94	12.06
CDX91784	Canola	nucleus	19.01	11.9
CDY35879	Canola	mitochondrion	20.11	7.96
CDX82713	Canola	mitochondrion	19.83	7.83
CDY43502	Canola	mitochondrion	20.11	7.81

Protein Annotations

EnsemblPlants:CDY33850	EnsemblPlantsGene:GSBRNA2T00055327001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	PFAM:PF03398	ProteinID:CDY33850
ProteinID:CDY33850.1	SEG:seg	UniParc:UPI0004EC5A12	UniProt:A0A078H5I2	MapMan:35.2	:

Description

BnaC06g05030DBnaC06g05030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H5I2]

Coordinates

chrLK032323:+:84130..85449

Molecular Weight (calculated)

42815.1 Da

IEP (calculated)

8.686

GRAVY (calculated)

-0.633

Length

363 amino acids

Sequence
(BLAST)

001: MFGFLFHRWR KASKCKKLLQ QLQSRLKLLK NKNYAISRHL RDDIALFIRI NDHTRALLRT KQLLLVQNSI SIYDLLLQFS DFILLHFSSI RKHRALVNDN
101: LNEAVSSLVF ASARCGELPD LIGIRELFLQ RYGQNYVTKA LQLLPGHLVN IQIKEKLSVT TVREDFKSAL LDEIAKEYGL RLEMLMLEYT PEVEKQVNEE
201: EEKKVVDSDF NSFSDDQSPE VYKFSLSDVE EEKSKEGRSM EDDYIEETEV GKDDHRVFRF KESSEEERSS LSSSSSLSSG GFKDMESLRY YKRREKIRTR
301: RRSSSSPTTC YHIVYNVFWV KNEEEEEEVR RRLLPKHVHP KLPDYDQIAA QFKVLRTQQR MHS

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.