CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039012.1-P	Field mustard	mitochondrion	93.91	94.11
CDY35879	Canola	mitochondrion	93.91	94.11
CDY04642	Canola	cytosol	12.08	74.0
AT2G19710.1	Thale cress	mitochondrion, nucleus	74.21	72.79
Zm00001d028142_P001	Maize	cytosol	6.53	60.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	6.42	59.0
CDY43502	Canola	mitochondrion	49.62	48.77
CDY69937	Canola	plastid	15.13	33.49
CDY58595	Canola	mitochondrion	11.75	33.44
CDY53122	Canola	mitochondrion	11.75	33.44
CDX75521	Canola	plastid	15.56	33.03
CDY41639	Canola	plastid	15.23	32.56
CDX69159	Canola	plastid	15.56	32.5
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	19.8	31.33
CDY46461	Canola	cytosol, mitochondrion, nucleus	17.52	28.45
CDX91784	Canola	nucleus	17.52	27.76
CDY21093	Canola	mitochondrion	11.1	25.82
KRH41442	Soybean	cytosol	12.4	25.56
KRH49036	Soybean	mitochondrion	29.27	25.55
CDY50176	Canola	mitochondrion	10.88	25.38
CDX87282	Canola	cytosol	5.55	25.25
KRH74171	Soybean	mitochondrion	29.16	25.19
CDY19375	Canola	mitochondrion	11.1	25.0
CDY48635	Canola	cytosol	8.71	23.88
TraesCS3B01G284600.1	Wheat	nucleus	27.31	22.59
TraesCS3D01G253500.1	Wheat	nucleus	27.31	22.47
Os01t0706400-01	Rice	plasma membrane	26.77	22.34
TraesCS3A01G252800.1	Wheat	cytosol	26.99	22.18
CDY21843	Canola	nucleus	5.88	22.04
CDY20110	Canola	nucleus	5.66	21.76
CDX87899	Canola	nucleus	6.53	21.74
TraesCS3B01G288900.2	Wheat	plastid	27.2	21.7
HORVU3Hr1G066420.1	Barley	nucleus	27.75	21.56
CDY49897	Canola	nucleus	6.2	21.27
CDY52976	Canola	mitochondrion	7.07	21.04
Zm00001d011684_P002	Maize	nucleus, plastid	27.53	20.89
EES03498	Sorghum	nucleus, plastid	27.53	20.45
CDY22873	Canola	mitochondrion	7.94	20.39
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	23.83	20.18
Solyc07g032230.2.1	Tomato	nucleus	23.29	19.94
CDX78503	Canola	mitochondrion	7.62	19.89
CDY33850	Canola	mitochondrion	7.83	19.83
GSMUA_Achr1P14380_001	Banana	nucleus	26.77	19.76
CDX98558	Canola	plastid	5.44	19.38
CDY49898	Canola	mitochondrion	5.77	19.34
CDX93076	Canola	mitochondrion	5.01	19.01
CDX97673	Canola	plastid	5.33	18.99
CDX70491	Canola	mitochondrion	7.62	18.47
CDX87900	Canola	mitochondrion	5.77	18.4
CDY15051	Canola	cytosol	3.48	18.08
CDY37561	Canola	nucleus	7.29	17.77
CDY41108	Canola	nucleus	7.29	17.72
VIT_11s0016g02580.t01	Wine grape	mitochondrion	19.37	15.1
CDX68838	Canola	nucleus	8.38	12.22
CDX75238	Canola	nucleus	8.38	12.2

Protein Annotations

EnsemblPlants:CDX82713	EnsemblPlantsGene:GSBRNA2T00137981001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF13	PFAM:PF03398	ProteinID:CDX82713
ProteinID:CDX82713.1	SEG:seg	UniParc:UPI0004EE2828	MapMan:35.2	:	:

Description

BnaC07g01530D

Coordinates

chrLK031829:+:1535149..1538682

Molecular Weight (calculated)

102831.0 Da

IEP (calculated)

6.730

GRAVY (calculated)

-1.103

Length

919 amino acids

Sequence
(BLAST)

001: MKKVLHRGFK PAKCKTALQM ANSRLKILKN KKEIQIKQLR RELAQLLEAG NTPTARIRVE HVVREEKTVA AYELIGIYCE LIVVRLGVIE SQKNCPIDLK
101: EAVASVLFAS QRLSDVPELS EIVKQFTTKY GKDFATSAIE LRPDSGVSRL LVDKLSVKAP DGPTKVKILT EIAEEHNVVW EAKSFVEPDP RDQLLSGASS
201: FQSASSVNVV DSSRIPAPAH VNVQYGTSER QHSSENSYYA SDGRSSSRTN NVTSGTANDY HHHPNARPSR SRPDEGETRN QNHGESKQRW ETEFVDSTDA
301: ARAAAEAAER ASFAARAAAE LSSKERMTRQ NSTESHMSSA SVNFRNEPSH RRDRSNVSED HSSPRHNVRM QHEGMDRTQQ DRYGRGKEPE NPPVVQPSER
401: HYLNNNSRKS GSFGKTGREK QQSEDEETDL NVGYSEDVHL RKQASRASSH SHSSNCSDEH VIDSDYMKSP KAVEENIFAT EYDHQSQGSF KDKDVHDHGH
501: DDVAGTFDDY SSFFDKPKFD AEDDDYDHGV GFSLLGSKAP NLTSTPAASW SFKSDHSKSH GNHSSSSQVF QESPLFDDVP TSPPASYHEP DRHAKFDNYD
601: PNSESEDDQP RHRGKVDETV NLTSHRSQKF EVSDPVGHEF FPVETDEHKD DSRTREDSDS EADAQTGLSF KPLVGGFRNK KTLPPYRMSL ASNETSSKSG
701: KEHNGTDDTG KSVPTPRSSR KASISEKRPS SIPPQPSSSD DDDSEIQLRS RKPETKPQTS YRDSRFSHDD SEEELPARAF VRSQEKTHKP TTRVRDQNRS
801: NFKIPASAWY EDDEEEVERV SAKPAKITGV SLRTKEQVKA HEKRSFPVTP TRTNTESHDQ PSPKSTSGQK TVSSSVPPTV KSPDPETPSR ERASHVHPNL
901: PDCDDIFARL GALRTPNRR

Best Arabidopsis Sequence Match ( AT2G19710.1 )
(BLAST)

001: MKKVLQRGFK PAKCKTALQM ANSRLKILKN KKEIQIKQLR RELAQLLESG QTPTARIRVE HVVREEKTVA AYELIGIYCE LLVVRLGVIE SQKNCPIDLK
101: EAVTSVLFAS QRLSDVPELS EIFKQFTTKY GKDFSTSAVE LRPDSGVSRL LVEKLSAKAP DGPTKVKILM AIAEEHNVVW EAQSFVESDP KDTELLNGAN
201: SFQPASSMNM DSSINSNKEQ PPNIHAPATV NAHHGSSERH HSPENSYANG GRSSSRSNNV TSGKADDYYH SKARPSRSRP DEGECRNPNH GYENSSSRNK
301: QKWEPEFVDS TDAARAAAEA AERASFAARA AAELSNKERM TRQDSTQSHI SSASVNLRNE PSHRRDRSNA QRESFSEDHV SPRRNVRMQY EDMDRTRQDR
401: YDRAEQIPPV DQPSGRHSVD NSRNNGSFGR EKQPSQDETD INVGYSEDVH LRKQSSRVSS HSHSSNYSDE NDLGSDFMKS PSIVEENIFA TEYDHQSQSS
501: FKDIDSHDHG HDDDAAATDN YDDYSSFFYQ PKFHAEDNHY QDEIDHGVGF SLLGSKTSAS AASWSFKGDH SKSHGKHSSS SSQVFQENPS SRLFDDVSTS
601: PPASYHEPDP HAKFDNYGPN SESDGDQPID KVSGDVHERG NLTSDRSHKF KVSDSAGHEV FPLDTEEHTD NSRTREESDS DSEPQLGLRL GALAGGFRNK
701: KTLPPYRMSS ASSKAEKEYI QIDDFGQSSR KDLYSKKASN TETRPSFMPP HPSSSDEDDS DMQHPGRTET KSDSLYSHSR VNHDDSEEEK LPTRSSSRIQ
801: ERSHKPSTGI RVQKRTNFKM PVSASSEDEE EVEREAARIN AKPNKTTGYG FSLRTKGQSK ANEKHSLPVT TKKTDKESHD QPSPRTVTSS HVPQTVKSPD
901: PDTPSRERER ASHVHPNLPE YDDIFARLGA LRAPSRR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ITF9]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.