Factsheet for AT2G19710.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82713	Canola	mitochondrion	72.79	74.21
CDY35879	Canola	mitochondrion	72.57	74.15
Bra039012.1-P	Field mustard	mitochondrion	72.57	74.15
Zm00001d028142_P001	Maize	cytosol	6.19	58.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	6.08	57.0
AT4G29440.1	Thale cress	mitochondrion	51.97	44.68
AT1G25420.1	Thale cress	mitochondrion	11.74	34.06
KRH60150	Soybean	cytosol, mitochondrion, nucleus, plastid	20.38	32.87
AT4G35730.1	Thale cress	plastid	14.62	29.4
KRH41442	Soybean	cytosol	12.91	27.13
KRH49036	Soybean	mitochondrion	29.24	26.02
KRH74171	Soybean	mitochondrion	29.14	25.66
AT1G13340.1	Thale cress	mitochondrion	10.57	24.21
AT1G34220.1	Thale cress	nucleus	16.54	23.88
TraesCS3B01G284600.1	Wheat	nucleus	27.21	22.95
TraesCS3D01G253500.1	Wheat	nucleus	26.89	22.56
Os01t0706400-01	Rice	plasma membrane	26.36	22.43
TraesCS3A01G252800.1	Wheat	cytosol	26.57	22.27
TraesCS3B01G288900.2	Wheat	plastid	27.21	22.14
HORVU3Hr1G066420.1	Barley	nucleus	27.11	21.47
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	24.55	21.2
Solyc07g032230.2.1	Tomato	nucleus	24.23	21.16
Zm00001d011684_P002	Maize	nucleus, plastid	26.36	20.4
EES03498	Sorghum	nucleus, plastid	25.93	19.64
GSMUA_Achr1P14380_001	Banana	nucleus	26.04	19.6
AT3G15490.1	Thale cress	mitochondrion, nucleus	4.27	18.96
AT2G14830.1	Thale cress	mitochondrion	7.68	18.75
AT1G52315.1	Thale cress	mitochondrion	6.4	17.29
AT1G79910.1	Thale cress	nucleus	6.62	16.27
VIT_11s0016g02580.t01	Wine grape	mitochondrion	19.32	15.35
AT4G32350.1	Thale cress	nucleus	8.64	11.07
AT1G51900.1	Thale cress	mitochondrion	7.47	9.04

Protein Annotations

Gene3D:1.20.1260.60	MapMan:35.2	EntrezGene:816490	ProteinID:AEC06916.1	ArrayExpress:AT2G19710	EnsemblPlantsGene:AT2G19710
RefSeq:AT2G19710	TAIR:AT2G19710	RefSeq:AT2G19710-TAIR-G	EnsemblPlants:AT2G19710.1	TAIR:AT2G19710.1	Unigene:At.48493
ncoils:Coil	UniProt:F4ITF9	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1
RefSeq:NP_179561.2	PFAM:PF03398	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281
PANTHER:PTHR12161	PANTHER:PTHR12161:SF13	UniParc:UPI000034ED3F	SEG:seg	:	:

Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4ITF9]

Coordinates

chr2:+:8506130..8510081

Molecular Weight (calculated)

104932.0 Da

IEP (calculated)

6.637

GRAVY (calculated)

-1.128

Length

937 amino acids

Sequence
(BLAST)

001: MKKVLQRGFK PAKCKTALQM ANSRLKILKN KKEIQIKQLR RELAQLLESG QTPTARIRVE HVVREEKTVA AYELIGIYCE LLVVRLGVIE SQKNCPIDLK
101: EAVTSVLFAS QRLSDVPELS EIFKQFTTKY GKDFSTSAVE LRPDSGVSRL LVEKLSAKAP DGPTKVKILM AIAEEHNVVW EAQSFVESDP KDTELLNGAN
201: SFQPASSMNM DSSINSNKEQ PPNIHAPATV NAHHGSSERH HSPENSYANG GRSSSRSNNV TSGKADDYYH SKARPSRSRP DEGECRNPNH GYENSSSRNK
301: QKWEPEFVDS TDAARAAAEA AERASFAARA AAELSNKERM TRQDSTQSHI SSASVNLRNE PSHRRDRSNA QRESFSEDHV SPRRNVRMQY EDMDRTRQDR
401: YDRAEQIPPV DQPSGRHSVD NSRNNGSFGR EKQPSQDETD INVGYSEDVH LRKQSSRVSS HSHSSNYSDE NDLGSDFMKS PSIVEENIFA TEYDHQSQSS
501: FKDIDSHDHG HDDDAAATDN YDDYSSFFYQ PKFHAEDNHY QDEIDHGVGF SLLGSKTSAS AASWSFKGDH SKSHGKHSSS SSQVFQENPS SRLFDDVSTS
601: PPASYHEPDP HAKFDNYGPN SESDGDQPID KVSGDVHERG NLTSDRSHKF KVSDSAGHEV FPLDTEEHTD NSRTREESDS DSEPQLGLRL GALAGGFRNK
701: KTLPPYRMSS ASSKAEKEYI QIDDFGQSSR KDLYSKKASN TETRPSFMPP HPSSSDEDDS DMQHPGRTET KSDSLYSHSR VNHDDSEEEK LPTRSSSRIQ
801: ERSHKPSTGI RVQKRTNFKM PVSASSEDEE EVEREAARIN AKPNKTTGYG FSLRTKGQSK ANEKHSLPVT TKKTDKESHD QPSPRTVTSS HVPQTVKSPD
901: PDTPSRERER ASHVHPNLPE YDDIFARLGA LRAPSRR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.