Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87282 | Canola | cytosol | 43.04 | 81.19 |
| CDY41108 | Canola | nucleus | 77.69 | 78.31 |
| CDY37561 | Canola | nucleus | 77.17 | 77.98 |
| Bra008502.1-P | Field mustard | nucleus | 76.38 | 76.78 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 32.28 | 71.1 |
| KRG89505 | Soybean | mitochondrion | 25.46 | 51.32 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 19.68 | 41.9 |
| KRH44367 | Soybean | mitochondrion | 30.71 | 36.34 |
| KRH23458 | Soybean | mitochondrion | 35.7 | 34.09 |
| KRH47048 | Soybean | mitochondrion | 33.6 | 33.51 |
| PGSC0003DMT400042551 | Potato | nucleus | 26.77 | 33.01 |
| Solyc06g066690.2.1 | Tomato | nucleus | 25.98 | 32.04 |
| AT1G52315.1 | Thale cress | mitochondrion | 27.82 | 30.55 |
| Solyc03g120120.2.1 | Tomato | nucleus | 37.53 | 30.04 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 38.58 | 29.34 |
| PGSC0003DMT400014529 | Potato | nucleus | 32.81 | 27.78 |
| Solyc12g043150.1.1 | Tomato | nucleus | 34.65 | 25.88 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 26.25 | 21.83 |
| PGSC0003DMT400092826 | Potato | nucleus | 24.15 | 21.65 |
| AT2G14830.1 | Thale cress | mitochondrion | 21.78 | 21.61 |
| AT3G15490.1 | Thale cress | mitochondrion, nucleus | 11.55 | 20.85 |
| AT1G25420.1 | Thale cress | mitochondrion | 16.8 | 19.81 |
| AT4G35730.1 | Thale cress | plastid | 21.78 | 17.81 |
| Os02t0159200-01 | Rice | nucleus | 30.18 | 17.04 |
| EES04550 | Sorghum | nucleus | 29.92 | 16.69 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.45 | 16.36 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 30.45 | 16.27 |
| Zm00001d053852_P001 | Maize | nucleus | 29.13 | 16.2 |
| Os06t0687000-00 | Rice | mitochondrion | 30.97 | 16.19 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 30.18 | 16.08 |
| AT4G32350.1 | Thale cress | nucleus | 30.71 | 15.98 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.45 | 15.98 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 30.18 | 15.84 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 29.66 | 15.8 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 32.55 | 15.8 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 30.45 | 15.76 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 29.92 | 15.68 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 25.98 | 14.78 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 25.72 | 14.56 |
| AT1G13340.1 | Thale cress | mitochondrion | 15.49 | 14.43 |
| Zm00001d014521_P001 | Maize | mitochondrion | 28.35 | 14.01 |
| AT1G34220.1 | Thale cress | nucleus | 19.95 | 11.71 |
| AT1G51900.1 | Thale cress | mitochondrion | 17.32 | 8.53 |
| Zm00001d036913_P001 | Maize | cytosol | 12.34 | 7.69 |
| AT2G19710.1 | Thale cress | mitochondrion, nucleus | 16.27 | 6.62 |
| Zm00001d051744_P001 | Maize | nucleus | 7.87 | 5.98 |
| AT4G29440.1 | Thale cress | mitochondrion | 17.06 | 5.96 |
Protein Annotations
| Gene3D:1.20.1260.60 | MapMan:35.2 | EntrezGene:844330 | ProteinID:AEE36322.1 | ArrayExpress:AT1G79910 | EnsemblPlantsGene:AT1G79910 |
| RefSeq:AT1G79910 | TAIR:AT1G79910 | RefSeq:AT1G79910-TAIR-G | EnsemblPlants:AT1G79910.1 | TAIR:AT1G79910.1 | EMBL:AY099682 |
| EMBL:AY128862 | Unigene:At.43076 | GO:GO:0003674 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | RefSeq:NP_178109.2 | PFAM:PF03398 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | UniProt:Q8L402 |
| UniParc:UPI000009EA69 | SEG:seg | : | : | : | : |
Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
Coordinates
chr1:+:30054884..30057181
Molecular Weight (calculated)
43775.9 Da
IEP (calculated)
8.135
GRAVY (calculated)
-0.868
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.