Factsheet for Os06t0687000-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os07t0101400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	Os07t0101400-01	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	58.3	58.54
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	56.93	58.53
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	57.75	57.91
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	57.06	57.3
KXG20673	Sorghum	cytosol, nucleus, plastid	61.18	56.82
Zm00001d014521_P001	Maize	mitochondrion	57.61	54.47
GSMUA_Achr5P23530_001	Banana	nucleus	13.03	53.07
Os02t0159200-01	Rice	nucleus	46.23	49.93
KRH06586	Soybean	cytosol	4.12	49.18
KRG89505	Soybean	mitochondrion	10.97	42.33
Zm00001d051744_P001	Maize	nucleus	28.81	41.83
GSMUA_Achr6P29590_001	Banana	cytosol	24.83	39.52
Zm00001d036913_P001	Maize	cytosol	31.55	37.64
CDX87282	Canola	cytosol	10.29	37.13
PGSC0003DMT400042551	Potato	nucleus	14.81	34.95
GSMUA_Achr8P15690_001	Banana	mitochondrion	31.14	33.88
VIT_09s0002g04580.t01	Wine grape	nucleus	23.18	33.73
CDX87899	Canola	nucleus	12.76	33.7
Solyc06g066690.2.1	Tomato	nucleus	14.27	33.66
KRH23458	Soybean	mitochondrion	18.11	33.08
CDY52976	Canola	mitochondrion	13.99	33.01
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	30.32	32.84
KRH44367	Soybean	mitochondrion	14.4	32.61
KRH47048	Soybean	mitochondrion	16.46	31.41
CDY49898	Canola	mitochondrion	11.8	31.39
AT1G79910.1	Thale cress	nucleus	16.19	30.97
PGSC0003DMT400014529	Potato	nucleus	19.07	30.89
CDY37561	Canola	nucleus	15.91	30.77
CDY41108	Canola	nucleus	15.91	30.69
Solyc03g120120.2.1	Tomato	nucleus	20.03	30.67
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	7.27	30.64
Bra008502.1-P	Field mustard	nucleus	15.91	30.61
CDX87900	Canola	mitochondrion	11.93	30.21
AT1G52315.1	Thale cress	mitochondrion	14.27	29.97
CDY49897	Canola	nucleus	10.97	29.85
Bra018962.1-P	Field mustard	extracellular, vacuole	14.27	29.21
Solyc12g043150.1.1	Tomato	nucleus	19.62	28.04
PGSC0003DMT400092826	Potato	nucleus	14.81	25.41
Os03t0257500-01	Rice	mitochondrion	6.72	25.39
CDX68838	Canola	nucleus	21.81	25.24
CDX75238	Canola	nucleus	21.54	24.88
VIT_11s0016g04010.t01	Wine grape	nucleus	24.01	24.1
KRH39280	Soybean	mitochondrion, nucleus	24.14	23.95
KRH48400	Soybean	mitochondrion, nucleus	24.14	23.95
Solyc07g022860.2.1	Tomato	nucleus	16.6	21.96
PGSC0003DMT400022180	Potato	nucleus	16.6	21.92
KRH60286	Soybean	nucleus	22.5	21.41
AT4G32350.1	Thale cress	nucleus	21.4	21.31
KRH41578	Soybean	nucleus	22.36	20.43
Os01t0687700-01	Rice	mitochondrion, plasma membrane	7.96	18.18
Os03t0710000-01	Rice	plasma membrane	8.09	16.62
Bra030391.1-P	Field mustard	nucleus	11.39	16.6
Os09t0547200-01	Rice	mitochondrion	10.29	15.76
Os03t0257600-01	Rice	mitochondrion	9.6	12.96
Os08t0175200-01	Rice	nucleus	9.74	12.66
Os01t0706400-01	Rice	plasma membrane	12.62	8.36

Protein Annotations

EnsemblPlants:Os06t0687000-00	EnsemblPlantsGene:Os06g0687000	EntrezGene:9271691	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF40	PFAM:PF03398
ProteinID:BAS99198.1	RefSeq:XP_015643362.1	SEG:seg	UniParc:UPI000393AD60	UniProt:A0A0P0X040	MapMan:35.2

Description

Domain of unknown function DUF292, eukaryotic domain containing protein. (Os06t0687000-00)

Coordinates

chr6:-:28643856..28647795

Molecular Weight (calculated)

82031.9 Da

IEP (calculated)

9.369

GRAVY (calculated)

-0.979

Length

729 amino acids

Sequence
(BLAST)

001: MFGSLLNSKF YNKCKHAFKC IRTRLALIRR KKQAMIRFMK KDIADLLTNG LDTHAFGRMD GLIIEMNHAS CYDMIEQFCE YIGKQLNSLQ KQGDCPQETR
101: EAVSTLIFAA ARFPDLPELC DLRHIFTERY GHFLEPFVSL EFVQKLDNKV FTNEEKIQAM QSVSEELLVD FDIKAFKIKL WATPETKHDL PAKDSKKQVE
201: LAVPLSSKKG DDAAPSGRKS EAATLGHKNK LEASLKQQKD VHPVADGIDR LRENTRRQHA DKSDGKGHVE KPVSDSEMKR RNIQKEVQKA NKKDVRPCEK
301: ELMEAVELDL NGLPKKEFGS LKVPEAESKK TFALNVKPKK DNDLEKENES NLGHHHRSHI PCAADHADSG LRTLGLDKQG LQSVNPLNGN TKNRMPPYSK
401: LDGSTGKKCS EKEENTGCLN ARPHHLADKG NPVQDRQPVP ERAAYVRPPY IKPKLNMETV NDDPAERAAS DYSKRAIPEQ TDHLSDKDPL RPVSVRSKYA
501: KPPAPAAVYD EAPANEKVSS RTPSSHRRHT SRQNAVNDGS ARRDGSRQPH GGKGMDDVNG ENVQRTPSSR PRHSGRRNGA LYTEDYDGFM QRHKSEEDEA
601: AIDFGNLLPR TGNGHRRHKS RNTDARSGVD EEERMMDKLL RHYSKKGLDA EINPAPTNKA EEQSEQKGSM HPPGRAISLP GESVCRDEDV KFPARSTSLQ
701: PDCPKTVHVH PKMPDFDELA ARVRALRKA

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.