Factsheet for VIT_11s0016g04010.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06586	Soybean	cytosol	6.61	78.69
GSMUA_Achr5P23530_001	Banana	nucleus	12.4	50.28
KRH48400	Soybean	mitochondrion, nucleus	41.87	41.36
KRH39280	Soybean	mitochondrion, nucleus	41.87	41.36
VIT_09s0002g04580.t01	Wine grape	nucleus	27.14	39.32
KRH60286	Soybean	nucleus	40.5	38.38
CDX68838	Canola	nucleus	32.64	37.62
CDX75238	Canola	nucleus	32.37	37.24
KRH41578	Soybean	nucleus	39.94	36.34
PGSC0003DMT400022180	Potato	nucleus	27.27	35.87
Solyc07g022860.2.1	Tomato	nucleus	26.86	35.39
AT4G32350.1	Thale cress	nucleus	33.06	32.79
GSMUA_Achr6P29590_001	Banana	cytosol	19.28	30.57
VIT_14s0006g03050.t01	Wine grape	mitochondrion	6.34	29.49
VIT_12s0059g01700.t01	Wine grape	golgi	9.09	28.33
Zm00001d053852_P001	Maize	nucleus	25.48	27.01
EES04550	Sorghum	nucleus	25.34	26.94
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	25.34	25.73
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	25.21	25.59
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	24.93	25.39
Os02t0159200-01	Rice	nucleus	23.42	25.19
HORVU6Hr1G025460.3	Barley	nucleus	25.34	25.0
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	24.66	24.66
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	23.97	24.54
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	24.24	24.21
Os06t0687000-00	Rice	mitochondrion	24.1	24.01
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	23.55	23.55
GSMUA_Achr8P15690_001	Banana	mitochondrion	20.52	22.24
VIT_00s1235g00010.t01	Wine grape	mitochondrion	10.61	22.13
KXG20673	Sorghum	cytosol, nucleus, plastid	23.69	21.91
VIT_01s0011g03610.t01	Wine grape	mitochondrion	9.92	21.88
Zm00001d014521_P001	Maize	mitochondrion	22.45	21.14
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	10.47	21.05
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.28	20.8
VIT_18s0164g00040.t01	Wine grape	nucleus	12.12	16.33
VIT_01s0011g03330.t01	Wine grape	mitochondrion	10.06	15.6
Zm00001d036913_P001	Maize	cytosol	8.26	9.82
VIT_11s0016g02580.t01	Wine grape	mitochondrion	12.53	7.72
Zm00001d051744_P001	Maize	nucleus	4.68	6.77

Protein Annotations

ArrayExpress:VIT_11s0016g04010	EMBL:FN595756	EnsemblPlants:VIT_11s0016g04010.t01	EnsemblPlantsGene:VIT_11s0016g04010	EntrezGene:104880647	Gene3D:1.20.1260.60
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF29
PFAM:PF03398	ProteinID:CBI28081	ProteinID:CBI28081.3	RefSeq:XP_010656332.1	SEG:seg	UniParc:UPI0001BE31A2
UniProt:D7TBP6	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr11:+:3263191..3268784

Molecular Weight (calculated)

82202.7 Da

IEP (calculated)

9.859

GRAVY (calculated)

-1.106

Length

726 amino acids

Sequence
(BLAST)

001: MLDGLLGRGF TSKCKSWIKG TRTRIDVIRR KRDATQKFLK KDVADLLANG LDINAFGRVE GLLKELMLSW CYDFVEQSCD CILKHLSIMQ KQSECPEECR
101: EAVSSLMFAA ARFSDLPELR DLRNIFQEKY GNYVEHFVNK EFAENLTSKP PTREKKIQLM QDIASEFSIR WDSRTFEQTM SKPSASVPEK PKKVGSFNVI
201: DDKHKLPNGQ DTVLKRYKSD TSSRERHEGT NKGQKLQSDR EGNHTNNLYQ PLNSREAHDI PFQGRQELTA DRHKMFIGKD AASETIRSGS SSHGKRHEGI
301: DGAYKLHNIG ENTVSKRENQ ETLSHGKSNS SATHVERLIK SDDRAVPFAG NKNTGQHNTG KSIREVEEVE KSYYNNAIPP PYVKPPKSSK HGANKGSKRA
401: PIDPSTHNRA GATNTADGIQ IRSDHLDHER QVFGSENGHH DHDRQVAGPA RMNNRHDKSY QHQDDLTGDP IPKTRSSRRR HSRSPSSHND VGNFEDSEAP
501: VDPSIHIRAS AKNRSERIQG GSDRSDHEGQ FVGPVGHGHE KDYYYQDDIT GDPLRRPRSL RRRRSKSLSH EDSDHIEGAG VVKRNSSSRR REHSRRGMQV
601: VLDDGRYEID EEERIIDRLL LHYSKKPTAY EPGKVRKKSK AHPSHHSGES PENESKEGPG VKSEIVPTTA RSVSLPREQT STSEATKVFA RTKSFQPDML
701: NQARHVHPKL PDYDDLAARF AALKGR

Best Arabidopsis Sequence Match ( AT4G32350.3 )
(BLAST)

001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.