Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007888_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Zm00001d007888_P002 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04550 | Sorghum | nucleus | 86.28 | 86.53 |
| Os02t0159200-01 | Rice | nucleus | 64.09 | 65.04 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 61.31 | 58.74 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 60.73 | 58.34 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 60.88 | 58.32 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 61.02 | 56.79 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 13.28 | 50.84 |
| KRH06586 | Soybean | cytosol | 4.53 | 50.82 |
| KRG89505 | Soybean | mitochondrion | 10.95 | 39.68 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 25.99 | 38.86 |
| CDX87282 | Canola | cytosol | 10.8 | 36.63 |
| Zm00001d014521_P001 | Maize | mitochondrion | 41.17 | 36.58 |
| PGSC0003DMT400042551 | Potato | nucleus | 16.06 | 35.6 |
| CDX87899 | Canola | nucleus | 13.72 | 34.06 |
| Solyc06g066690.2.1 | Tomato | nucleus | 15.18 | 33.66 |
| CDY52976 | Canola | mitochondrion | 15.04 | 33.33 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 32.55 | 33.28 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 23.8 | 32.53 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 31.68 | 32.24 |
| CDY49898 | Canola | mitochondrion | 12.55 | 31.39 |
| Zm00001d048482_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 4.53 | 31.0 |
| Zm00001d028142_P001 | Maize | cytosol | 4.53 | 31.0 |
| CDY49897 | Canola | nucleus | 11.97 | 30.6 |
| KRH44367 | Soybean | mitochondrion | 14.31 | 30.43 |
| Solyc03g120120.2.1 | Tomato | nucleus | 20.73 | 29.83 |
| CDY37561 | Canola | nucleus | 16.35 | 29.71 |
| AT1G52315.1 | Thale cress | mitochondrion | 15.04 | 29.68 |
| CDY41108 | Canola | nucleus | 16.35 | 29.63 |
| KRH47048 | Soybean | mitochondrion | 16.5 | 29.58 |
| CDX87900 | Canola | mitochondrion | 12.41 | 29.51 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 7.45 | 29.48 |
| PGSC0003DMT400014529 | Potato | nucleus | 19.27 | 29.33 |
| KRH23458 | Soybean | mitochondrion | 17.08 | 29.32 |
| Bra008502.1-P | Field mustard | nucleus | 16.2 | 29.29 |
| AT1G79910.1 | Thale cress | nucleus | 16.2 | 29.13 |
| Solyc12g043150.1.1 | Tomato | nucleus | 21.61 | 29.02 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 14.89 | 28.65 |
| Zm00001d052541_P001 | Maize | extracellular | 5.99 | 28.47 |
| Zm00001d034058_P004 | Maize | mitochondrion | 7.59 | 27.37 |
| PGSC0003DMT400092826 | Potato | nucleus | 16.06 | 25.88 |
| Zm00001d028457_P001 | Maize | mitochondrion | 7.45 | 25.5 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 27.01 | 25.48 |
| CDX68838 | Canola | nucleus | 22.48 | 24.44 |
| CDX75238 | Canola | nucleus | 22.48 | 24.41 |
| Zm00001d051744_P001 | Maize | nucleus | 17.37 | 23.71 |
| KRH48400 | Soybean | mitochondrion, nucleus | 25.11 | 23.4 |
| KRH39280 | Soybean | mitochondrion, nucleus | 24.53 | 22.86 |
| Zm00001d034057_P001 | Maize | mitochondrion | 7.59 | 22.71 |
| Zm00001d036913_P001 | Maize | cytosol | 19.85 | 22.26 |
| Zm00001d047886_P001 | Maize | mitochondrion | 8.03 | 22.0 |
| Zm00001d047885_P001 | Maize | mitochondrion | 8.03 | 22.0 |
| AT4G32350.1 | Thale cress | nucleus | 23.21 | 21.72 |
| Zm00001d047887_P001 | Maize | mitochondrion | 7.88 | 21.69 |
| KRH60286 | Soybean | nucleus | 24.09 | 21.54 |
| KRH41578 | Soybean | nucleus | 24.67 | 21.18 |
| PGSC0003DMT400022180 | Potato | nucleus | 16.93 | 21.01 |
| Zm00001d043813_P001 | Maize | mitochondrion | 9.64 | 20.56 |
| Solyc07g022860.2.1 | Tomato | nucleus | 16.5 | 20.51 |
| Zm00001d047884_P001 | Maize | cytosol | 4.23 | 20.28 |
| Bra030391.1-P | Field mustard | nucleus | 12.12 | 16.6 |
| Zm00001d033714_P001 | Maize | mitochondrion | 8.47 | 16.52 |
| Zm00001d021453_P002 | Maize | plastid | 12.12 | 15.87 |
| Zm00001d028456_P001 | Maize | mitochondrion | 10.37 | 13.37 |
| Zm00001d024425_P003 | Maize | cytosol | 10.95 | 13.23 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 10.51 | 13.19 |
| Zm00001d011684_P002 | Maize | nucleus, plastid | 13.28 | 7.51 |
Protein Annotations
| EnsemblPlants:Zm00001d053852_P001 | EnsemblPlants:Zm00001d053852_T001 | EnsemblPlantsGene:Zm00001d053852 | EntrezGene:100383750 | Gene3D:1.20.1260.60 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0015031 | InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 |
| ProteinID:AQK60520.1 | SEG:seg | UniParc:UPI00022130D9 | UniProt:K7U807 | MapMan:35.2 | : |
Description
Regulator of Vps4 activity in the MVB pathway protein
Coordinates
chr4:-:242208559..242212798
Molecular Weight (calculated)
77418.4 Da
IEP (calculated)
9.719
GRAVY (calculated)
-1.085
Length
685 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDSLLNSKF YNKCKHAIKC TRTRLDLLRR KKQAMVKFLK KDVADLLTSG LESHAFARME GLIIEMNQAS CYDTIEEYCE YIVKQLSHMQ KESECPQEAL
101: EAVSTLIFAA ARFPDLPELC DLRHIFTERY GSSVEPFVNS EFVQNLQNKS FTDEEKLRVM KRVAEEFSVP FDSRALQWKI TCGSQNKHDL PKKSSLKHDM
201: ERDGHKVDRH AVHERKSKAM PEGYEQKQEM NVKPKDIHVV PDGIGQLGEK NRKNYSDKPS ERRHVDNPLP PLDMKEKNGQ KEMKKSGKKD SDRRRELMDV
301: EVLDINGLKK QDVGAMKPSG GPDRSWGHAD LGLKTLGIEK QEIDPISTLN GKAVNKPPPY SKPYRAPMGE KVAEDRQPVP EKATNMRPPY VKPNFEKHAN
401: QGANGHKQSG TEETIYQKRE PIYDPVSVRS RVPRPPAHAD EYAGMEEKMA NQAPDGRRRH SSKRNGAHDN HDQRVAHVVP PLEGMGVDDD INNARPFHRV
501: PSERRKHKSR QNGSTSGSDY NWASEGHESD GDDVNTSIDF GNLLPRAPSS HRKHRSRSAD PRKAGGRGDD EERMMDKLLM HYSKKGLDRE ERKERANKSR
601: TLFPRDDQRG DGAGELSSKG GGASAHRPER AASLPSESAS PKAKAKAKPP ARSMSMQPEM SRGNVHPSMP DFDELAARIS ALRNA
101: EAVSTLIFAA ARFPDLPELC DLRHIFTERY GSSVEPFVNS EFVQNLQNKS FTDEEKLRVM KRVAEEFSVP FDSRALQWKI TCGSQNKHDL PKKSSLKHDM
201: ERDGHKVDRH AVHERKSKAM PEGYEQKQEM NVKPKDIHVV PDGIGQLGEK NRKNYSDKPS ERRHVDNPLP PLDMKEKNGQ KEMKKSGKKD SDRRRELMDV
301: EVLDINGLKK QDVGAMKPSG GPDRSWGHAD LGLKTLGIEK QEIDPISTLN GKAVNKPPPY SKPYRAPMGE KVAEDRQPVP EKATNMRPPY VKPNFEKHAN
401: QGANGHKQSG TEETIYQKRE PIYDPVSVRS RVPRPPAHAD EYAGMEEKMA NQAPDGRRRH SSKRNGAHDN HDQRVAHVVP PLEGMGVDDD INNARPFHRV
501: PSERRKHKSR QNGSTSGSDY NWASEGHESD GDDVNTSIDF GNLLPRAPSS HRKHRSRSAD PRKAGGRGDD EERMMDKLLM HYSKKGLDRE ERKERANKSR
601: TLFPRDDQRG DGAGELSSKG GGASAHRPER AASLPSESAS PKAKAKAKPP ARSMSMQPEM SRGNVHPSMP DFDELAARIS ALRNA
001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.