Factsheet for PGSC0003DMT400014529

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400069942

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	PGSC0003DMT400069942	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g120120.2.1	Tomato	nucleus	93.78	88.66
PGSC0003DMT400042551	Potato	nucleus	32.89	47.9
PGSC0003DMT400092826	Potato	nucleus	43.56	46.12
KRG89505	Soybean	mitochondrion	18.67	44.44
GSMUA_Achr5P23530_001	Banana	nucleus	17.11	43.02
CDX87282	Canola	cytosol	17.33	38.61
VIT_09s0002g04580.t01	Wine grape	nucleus	40.89	36.73
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	14.0	36.42
KRH23458	Soybean	mitochondrion	30.44	34.34
KRH47048	Soybean	mitochondrion	28.67	33.77
AT1G79910.1	Thale cress	nucleus	27.78	32.81
CDY41108	Canola	nucleus	27.56	32.8
Bra008502.1-P	Field mustard	nucleus	27.56	32.72
CDY37561	Canola	nucleus	27.33	32.63
KRH44367	Soybean	mitochondrion	22.44	31.37
GSMUA_Achr6P29590_001	Banana	cytosol	24.67	24.24
PGSC0003DMT400032944	Potato	mitochondrion	10.44	22.6
PGSC0003DMT400022180	Potato	nucleus	25.33	20.65
PGSC0003DMT400032356	Potato	cytosol, mitochondrion	11.78	20.15
Os02t0159200-01	Rice	nucleus	29.33	19.56
EES04550	Sorghum	nucleus	29.56	19.47
Zm00001d053852_P001	Maize	nucleus	29.33	19.27
Os06t0687000-00	Rice	mitochondrion	30.89	19.07
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	29.33	18.51
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	29.33	18.46
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	29.33	18.46
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	28.0	17.77
GSMUA_Achr8P15690_001	Banana	mitochondrion	26.44	17.76
PGSC0003DMT400020212	Potato	cytosol	15.56	17.72
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	26.44	17.68
HORVU6Hr1G025460.3	Barley	nucleus	28.67	17.53
TraesCS7D01G433700.1	Wheat	cytosol, mitochondrion, nucleus	28.0	17.36
KXG20673	Sorghum	cytosol, nucleus, plastid	30.22	17.32
Zm00001d014521_P001	Maize	mitochondrion	29.56	17.25
TraesCS7B01G345200.1	Wheat	cytosol, nucleus, plastid	27.78	17.19
HORVU7Hr1G101130.3	Barley	cytosol, nucleus	27.56	17.08
PGSC0003DMT400003908	Potato	plastid	18.44	16.97
PGSC0003DMT400070850	Potato	cytosol	17.56	14.96
PGSC0003DMT400033769	Potato	mitochondrion	14.0	14.75
PGSC0003DMT400047266	Potato	nucleus	17.11	14.15
Zm00001d036913_P001	Maize	cytosol	10.89	8.02
PGSC0003DMT400030456	Potato	mitochondrion, nucleus, plastid	18.22	7.56
Zm00001d051744_P001	Maize	nucleus	6.44	5.78

Protein Annotations

EnsemblPlants:PGSC0003DMT400014529	EnsemblPlantsGene:PGSC0003DMG400005688	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF14	PFAM:PF03398	PGSC:PGSC0003DMG400005688	SEG:seg
UniParc:UPI0002955443	UniProt:M1A4E1	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400005688]

Coordinates

chr3:+:59488932..59492202

Molecular Weight (calculated)

52215.4 Da

IEP (calculated)

8.852

GRAVY (calculated)

-1.100

Length

450 amino acids

Sequence
(BLAST)

001: MVKRKRNAML KYLKNDIADL LKTGLDVNAY SRAEGLLVEM NLSRCYDFLE QYCEHILNYL SVMYKQRECP EECREAVASL IFAAARFADV PELRELRSVF
101: TERYGNFLEC HVNKEFLQNL KSVPPTMEMK IQLMKDIASE SGIEWNSKAL EQKLYNPLVS EQDWTKSQND QKYNLHGKME ESPQKKDSEV AKFDHENARQ
201: LSKDKLEHNS SYGRKVVPDD EHSSSRRRRE RSNRRRRDSL SRKTDDLPPV KDIEVIQRQQ NKPEIEIAPE EESDDKKPLH YRSILPPYIK PSLTKNTSDT
301: VSPTSSTGEE NCKDDAAEKA KDKPRSARTR HGTKVTTGDD KEPQDEEEKL IDRLLIYLSR KKYQNSVNAP KEAAVDSPSK VSRRRSMGNR TLSLPAEREQ
401: TSPRDQRRGH ARTNSFQPDM LGSNRHVHPK LPDYDDFVAR LASLREQSRE

Best Arabidopsis Sequence Match ( AT1G79910.1 )
(BLAST)

001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.