Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS2A01G255800.1 | |
TraesCS2D01G266900.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G79910.1 | TraesCS2A01G255800.1 | AT2G39760.1 | 21798944 |
AT1G79910.1 | TraesCS2D01G266900.1 | AT2G39760.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 95.63 | 93.26 |
TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 92.52 | 90.36 |
HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 90.41 | 88.29 |
Os06t0687000-00 | Rice | mitochondrion | 58.53 | 56.93 |
KRH06586 | Soybean | cytosol | 4.51 | 52.46 |
GSMUA_Achr5P23530_001 | Banana | nucleus | 13.12 | 51.96 |
KXG20673 | Sorghum | cytosol, nucleus, plastid | 55.71 | 50.32 |
Zm00001d014521_P001 | Maize | mitochondrion | 53.31 | 49.03 |
TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 44.15 | 43.78 |
KRG89505 | Soybean | mitochondrion | 11.0 | 41.27 |
CDX87282 | Canola | cytosol | 10.72 | 37.62 |
GSMUA_Achr6P29590_001 | Banana | cytosol | 23.98 | 37.12 |
Zm00001d051744_P001 | Maize | nucleus | 25.95 | 36.65 |
Zm00001d036913_P001 | Maize | cytosol | 29.9 | 34.7 |
KRH44367 | Soybean | mitochondrion | 14.95 | 32.92 |
PGSC0003DMT400042551 | Potato | nucleus | 14.1 | 32.36 |
VIT_09s0002g04580.t01 | Wine grape | nucleus | 22.85 | 32.34 |
CDY37561 | Canola | nucleus | 17.07 | 32.1 |
CDY52976 | Canola | mitochondrion | 13.96 | 32.04 |
KRH47048 | Soybean | mitochondrion | 17.21 | 31.94 |
Bra008502.1-P | Field mustard | nucleus | 17.07 | 31.93 |
Solyc06g066690.2.1 | Tomato | nucleus | 13.82 | 31.72 |
CDY41108 | Canola | nucleus | 16.78 | 31.48 |
CDX87899 | Canola | nucleus | 12.13 | 31.16 |
CDY49898 | Canola | mitochondrion | 11.99 | 31.02 |
AT1G79910.1 | Thale cress | nucleus | 16.36 | 30.45 |
KRH23458 | Soybean | mitochondrion | 17.07 | 30.33 |
GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 28.63 | 30.16 |
CDX87900 | Canola | mitochondrion | 11.99 | 29.51 |
Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 7.19 | 29.48 |
CDY49897 | Canola | nucleus | 11.14 | 29.48 |
GSMUA_Achr8P15690_001 | Banana | mitochondrion | 27.64 | 29.25 |
Solyc03g120120.2.1 | Tomato | nucleus | 19.18 | 28.57 |
Bra018962.1-P | Field mustard | extracellular, vacuole | 14.1 | 28.09 |
PGSC0003DMT400014529 | Potato | nucleus | 17.77 | 28.0 |
AT1G52315.1 | Thale cress | mitochondrion | 13.68 | 27.95 |
Solyc12g043150.1.1 | Tomato | nucleus | 19.46 | 27.06 |
TraesCS4A01G084900.2 | Wheat | mitochondrion | 6.77 | 26.52 |
PGSC0003DMT400092826 | Potato | nucleus | 14.53 | 24.24 |
VIT_11s0016g04010.t01 | Wine grape | nucleus | 24.54 | 23.97 |
CDX68838 | Canola | nucleus | 21.02 | 23.65 |
KRH39280 | Soybean | mitochondrion, nucleus | 24.4 | 23.54 |
CDX75238 | Canola | nucleus | 20.87 | 23.45 |
KRH48400 | Soybean | mitochondrion, nucleus | 24.12 | 23.27 |
KRH60286 | Soybean | nucleus | 23.13 | 21.41 |
KRH41578 | Soybean | nucleus | 23.13 | 20.55 |
AT4G32350.1 | Thale cress | nucleus | 21.02 | 20.36 |
PGSC0003DMT400022180 | Potato | nucleus | 15.66 | 20.11 |
TraesCS3A01G263500.1 | Wheat | mitochondrion, plastid | 9.03 | 20.06 |
Solyc07g022860.2.1 | Tomato | nucleus | 15.51 | 19.96 |
TraesCS4A01G084800.1 | Wheat | mitochondrion | 7.05 | 17.73 |
Bra030391.1-P | Field mustard | nucleus | 11.71 | 16.6 |
TraesCS4A01G269300.1 | Wheat | mitochondrion | 7.62 | 15.25 |
TraesCS5A01G346800.1 | Wheat | plastid | 10.3 | 15.05 |
TraesCS3A01G459100.1 | Wheat | cytosol, plastid | 10.3 | 14.2 |
TraesCS4A01G085000.1 | Wheat | mitochondrion, plastid | 9.73 | 12.9 |
TraesCS3A01G252800.1 | Wheat | cytosol | 12.13 | 7.69 |
Protein Annotations
EnsemblPlants:TraesCS7A01G445700.1 | EnsemblPlantsGene:TraesCS7A01G445700 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF40 | PFAM:PF03398 | SEG:seg |
MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:640576923..640580609
Molecular Weight (calculated)
79402.0 Da
IEP (calculated)
8.672
GRAVY (calculated)
-0.934
Length
709 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDGLINSKF YNRCKHAFKC TRTRLVVIRR KKQAMIGFLK KDVADLLING LDIHAFGRMD ALIMEMNHAS CYDMIEQCCD FLGKQLNSLQ KQRDCPQESM
101: EAVSTLIFAT ARFPDLPELC DLRHIFTERY GGSLEPFVSL EFIWKLESEL FTNEEKFQVM ESIAEESSVG FDMRALEIKL WAARESEDDL LEKDSMNKDE
201: PAVPLPIKQK DDGRLNDNTG RKNYDKSHGK EQLEKSVSPL DLKREKAQKD DNTRRRHADK ADGKEHLEKS VSPLQTEREE AQRRVQKLKK KDLRPSEKEL
301: MEAVELDING LPKQGSGLVK FPETESNRIV PPIVKPKETK KELGVEKENN RGLGYHHRSP IPGRPDYTRR HANLGCKALG LQNQGPTSLS PTSGKTTNRP
401: SPVSNPNGAK GRNCDEKEEG NSCLRGRPQH LEDLGHTVQN GQRAPHRVAN VQPPYVKPKL GMQPVKDDPA KPIDSNCNMS ERTDRLVDKD VLRPVSVRRR
501: PAAPAFDEAP NGEKVTSQKG NSHRIQPSKH KGATDGYDRK GNGVGNGRNV ERTPSGRPSH SGMRNGVLYD DDYDGSMQQP KAGEAEAIDF GNLLPRAANG
601: HHRLNSRNTD VHGGDPDEEE RMMDKLLMHY SKKGSGTDET KTTVETSRTA NCHGRAVSLP HESVSPGEAA KVPARSTSMR SDCPGGVRVH PKMPDFEELA
701: ARVMALRNA
101: EAVSTLIFAT ARFPDLPELC DLRHIFTERY GGSLEPFVSL EFIWKLESEL FTNEEKFQVM ESIAEESSVG FDMRALEIKL WAARESEDDL LEKDSMNKDE
201: PAVPLPIKQK DDGRLNDNTG RKNYDKSHGK EQLEKSVSPL DLKREKAQKD DNTRRRHADK ADGKEHLEKS VSPLQTEREE AQRRVQKLKK KDLRPSEKEL
301: MEAVELDING LPKQGSGLVK FPETESNRIV PPIVKPKETK KELGVEKENN RGLGYHHRSP IPGRPDYTRR HANLGCKALG LQNQGPTSLS PTSGKTTNRP
401: SPVSNPNGAK GRNCDEKEEG NSCLRGRPQH LEDLGHTVQN GQRAPHRVAN VQPPYVKPKL GMQPVKDDPA KPIDSNCNMS ERTDRLVDKD VLRPVSVRRR
501: PAAPAFDEAP NGEKVTSQKG NSHRIQPSKH KGATDGYDRK GNGVGNGRNV ERTPSGRPSH SGMRNGVLYD DDYDGSMQQP KAGEAEAIDF GNLLPRAANG
601: HHRLNSRNTD VHGGDPDEEE RMMDKLLMHY SKKGSGTDET KTTVETSRTA NCHGRAVSLP HESVSPGEAA KVPARSTSMR SDCPGGVRVH PKMPDFEELA
701: ARVMALRNA
001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.