Factsheet for TraesCS4A01G085000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	91.78	90.93
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	91.22	90.04
HORVU4Hr1G062110.1	Barley	mitochondrion	87.48	85.4
Os03t0257600-01	Rice	mitochondrion	62.62	62.04
EER92527	Sorghum	mitochondrion, plastid	62.06	61.94
TraesCS4A01G084900.2	Wheat	mitochondrion	20.75	61.33
Zm00001d028456_P001	Maize	mitochondrion	59.63	60.08
TraesCS4A01G084800.1	Wheat	mitochondrion	23.36	44.33
VIT_14s0006g03050.t01	Wine grape	mitochondrion	12.34	42.31
TraesCS4A01G269300.1	Wheat	mitochondrion	24.49	37.01
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	25.79	32.39
Solyc02g085830.2.1	Tomato	mitochondrion	12.15	31.25
KRH45249	Soybean	mitochondrion	22.8	30.81
PGSC0003DMT400032944	Potato	mitochondrion	11.96	30.77
PGSC0003DMT400033769	Potato	mitochondrion	23.93	29.98
Solyc05g009550.2.1	Tomato	mitochondrion	23.74	29.74
GSMUA_Achr6P24100_001	Banana	mitochondrion	26.73	29.24
KRH75395	Soybean	mitochondrion	21.68	28.78
VIT_01s0011g03330.t01	Wine grape	mitochondrion	24.3	27.78
GSMUA_Achr10P...	Banana	mitochondrion	25.05	27.69
CDY50176	Canola	mitochondrion	20.37	27.66
CDY21093	Canola	mitochondrion	20.0	27.09
CDY19375	Canola	mitochondrion	19.63	25.74
AT1G13340.1	Thale cress	mitochondrion	19.44	25.43
KRH46919	Soybean	mitochondrion	18.88	24.63
KRH01764	Soybean	mitochondrion	19.81	23.98
TraesCS3A01G263500.1	Wheat	mitochondrion, plastid	14.02	23.51
Bra019826.1-P	Field mustard	mitochondrion	20.19	21.86
TraesCS5A01G346800.1	Wheat	plastid	17.2	18.97
TraesCS3A01G459100.1	Wheat	cytosol, plastid	16.82	17.51
Bra016733.1-P	Field mustard	mitochondrion	20.0	14.32
TraesCS7A01G445700.1	Wheat	cytosol, mitochondrion, nucleus	12.9	9.73
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	12.9	9.65
TraesCS3A01G252800.1	Wheat	cytosol	16.07	7.69

Protein Annotations

EnsemblPlants:TraesCS4A01G085000.1	EnsemblPlantsGene:TraesCS4A01G085000	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF17	PFAM:PF03398	SEG:seg
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr4A:-:89620991..89623463

Molecular Weight (calculated)

57943.0 Da

IEP (calculated)

10.036

GRAVY (calculated)

-0.763

Length

535 amino acids

Sequence
(BLAST)

001: MGFFTRSTSK QTAKLKSLVK LAVARLAVVR RPRLGRRSIA RGDVAQLLSI GHLDRALARA EQVMEEDSVL EALDIIEHYC KVLVEHSAQL EKPKECGEDI
101: KAAAAGLIFA SARCGELPEL LDARAILASK FGREFERAAK EGSQAVVNPT LVQRLSGEKA SAEQQRRLAR EIAAENGILL DFPDGPGEVH QSKQNEQPKK
201: VPAPVPAEKP VEQLEVKTET SEAQRRQRLA DDDMSRSNLA RQRAEEKASR ESKKYDDVRM AAEAAFESAS FAAMAARAAV ELSRTESQGK GPRGGGRGHD
301: KVHPLQSSGA TERETRPPGR PQKPPSPSPS PSWSDKSTVS SVWSDAPARD PPSPPKGKSI VFDRSDGEDD DVVEDLVWTP QLRRPPHNRR TASAMGMDGV
401: GGNGNTRAEF QDSVPNGSGE ARPAHRRHAG GGARREAPEQ AGQYRAPPYR RSPAAGAGGN AEAYESSAFV ARAPYARITS ALEGGNEHIA RHEEVRRMGT
501: DARVLQEQVY GAAAPGPGRA PLTPDRRAIS VRTRR

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.