Factsheet for VIT_01s0011g03330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g03050.t01	Wine grape	mitochondrion	22.86	68.59
KRH45249	Soybean	mitochondrion	46.58	55.05
KRH75395	Soybean	mitochondrion	47.22	54.84
Solyc05g009550.2.1	Tomato	mitochondrion	47.01	51.52
PGSC0003DMT400033769	Potato	mitochondrion	47.01	51.52
CDY50176	Canola	mitochondrion	41.88	49.75
CDY21093	Canola	mitochondrion	41.03	48.61
CDY19375	Canola	mitochondrion	40.17	46.08
AT1G13340.1	Thale cress	mitochondrion	39.53	45.23
TraesCS4D01G219500.2	Wheat	mitochondrion	16.45	41.85
TraesCS4B01G219300.1	Wheat	mitochondrion	16.03	40.76
HORVU4Hr1G062250.1	Barley	mitochondrion	16.03	40.76
EER93588	Sorghum	mitochondrion	29.06	39.77
TraesCS4A01G269300.1	Wheat	mitochondrion	29.91	39.55
TraesCS4A01G084900.2	Wheat	mitochondrion	15.17	39.23
Bra019826.1-P	Field mustard	mitochondrion	41.24	39.07
Zm00001d033714_P001	Maize	mitochondrion	29.06	38.75
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	35.26	38.73
TraesCS4D01G044800.1	Wheat	mitochondrion	28.42	38.44
Os03t0710000-01	Rice	plasma membrane	29.06	38.31
TraesCS4B01G045100.1	Wheat	mitochondrion	28.42	37.68
EER92528	Sorghum	mitochondrion	14.96	37.63
TraesCS4D01G044400.1	Wheat	mitochondrion	27.99	37.22
TraesCS4B01G044800.1	Wheat	mitochondrion	26.71	37.2
GSMUA_Achr6P24100_001	Banana	mitochondrion	38.03	36.4
Zm00001d034058_P004	Maize	mitochondrion	14.32	35.26
Os03t0257500-01	Rice	mitochondrion	14.53	35.23
Zm00001d028457_P001	Maize	mitochondrion	14.32	33.5
GSMUA_Achr10P...	Banana	mitochondrion	32.91	31.82
Zm00001d047886_P001	Maize	mitochondrion	16.45	30.8
Zm00001d047887_P001	Maize	mitochondrion	16.24	30.52
Zm00001d047885_P001	Maize	mitochondrion	16.24	30.4
TraesCS4B01G219400.1	Wheat	mitochondrion	17.09	30.3
Zm00001d034057_P001	Maize	mitochondrion	14.53	29.69
VIT_00s1235g00010.t01	Wine grape	mitochondrion	21.58	29.02
TraesCS4D01G219800.1	Wheat	mitochondrion	17.31	28.83
OQU90964	Sorghum	mitochondrion	10.26	28.74
TraesCS4A01G084800.1	Wheat	mitochondrion	17.31	28.72
VIT_01s0011g03610.t01	Wine grape	mitochondrion	20.09	28.57
HORVU4Hr1G062260.2	Barley	plastid	17.09	28.07
Zm00001d028456_P001	Maize	mitochondrion	29.7	26.18
VIT_12s0059g01700.t01	Wine grape	golgi	12.82	25.75
Bra016733.1-P	Field mustard	mitochondrion	40.6	25.44
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	19.23	24.93
EER92527	Sorghum	mitochondrion, plastid	28.42	24.81
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	28.21	24.44
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	27.78	24.3
HORVU4Hr1G062110.1	Barley	mitochondrion	28.21	24.09
Os03t0257600-01	Rice	mitochondrion	27.35	23.7
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	27.35	23.62
Zm00001d047884_P001	Maize	cytosol	7.05	23.08
VIT_18s0164g00040.t01	Wine grape	nucleus	24.79	21.52
VIT_09s0002g04580.t01	Wine grape	nucleus	14.96	13.97
VIT_11s0016g04010.t01	Wine grape	nucleus	15.6	10.06
VIT_11s0016g02580.t01	Wine grape	mitochondrion	20.3	8.06

Protein Annotations

Gene3D:1.20.1260.60	EntrezGene:100252495	wikigene:100252495	MapMan:35.2	EMBL:AM472381	ProteinID:CAN68344
ProteinID:CAN68344.1	ProteinID:CCB50927	ProteinID:CCB50927.1	UniProt:F6HFP2	EMBL:FN595752	GO:GO:0006810
GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	EntrezGene:LOC100252495
wikigene:LOC100252495	PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF27	UniParc:UPI0002109608	ArrayExpress:VIT_01s0011g03330
EnsemblPlantsGene:VIT_01s0011g03330	EnsemblPlants:VIT_01s0011g03330.t01	RefSeq:XP_002279060	RefSeq:XP_002279060.2	RefSeq:XP_010647794.1	SEG:seg

Description

No Description!

Coordinates

chr1:-:3014379..3016292

Molecular Weight (calculated)

51426.5 Da

IEP (calculated)

6.062

GRAVY (calculated)

-0.698

Length

468 amino acids

Sequence
(BLAST)

001: MGKKIDALLG RNFKTSKFRA LVNLAISRAA ILKKQRQVRC SQARSDVVQL LNLGHHERAL IRVEQVIKEQ NMLDVYAMIE GYCLLLVERV SIIEEEKVCP
101: DELKEAASGL LYSTSRCGEF QELREIRAVL TSRYGKEFVA RAVELRNNCG VNPRLIQKLS VRPPDVEVRL NELKEIASEN GITLQLEGAS SATLEDKLDK
201: NQMENQPKPD QSANSGGAKP EESLLPEDQI EKGEGFSGSM KTRKKYKDVA DAAQAAFESA AYAAAAARAA VELSRTESHD PDDQNSPHPR RRLVSDGDES
301: KHEAAGKKDS GEIEKSDDGL ALEKIHPVEN QDSESEDEEI HNESQAQQSK WKKKAAELMR PMSSSSSDSA GGSLNVNSMS SDVMKLLEKD IVLDDSDDES
401: GNKHSGNLSS DMKPALQIPS SSQVDIKARA GPKNHIAQPA EGLGMPSVQH LNTGKRPFSV RTRGVRGY

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.