Factsheet for Solyc05g009550.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033769	Potato	mitochondrion	93.68	93.68
Solyc02g085830.2.1	Tomato	mitochondrion	26.7	54.81
KRH45249	Soybean	mitochondrion	46.84	50.51
KRH75395	Soybean	mitochondrion	47.54	50.37
VIT_01s0011g03330.t01	Wine grape	mitochondrion	51.52	47.01
CDY50176	Canola	mitochondrion	41.22	44.67
TraesCS4D01G219500.2	Wheat	mitochondrion	19.2	44.57
CDY21093	Canola	mitochondrion	40.52	43.8
TraesCS4B01G219300.1	Wheat	mitochondrion	18.74	43.48
HORVU4Hr1G062250.1	Barley	mitochondrion	18.74	43.48
CDY19375	Canola	mitochondrion	40.98	42.89
EER93588	Sorghum	mitochondrion	33.96	42.4
Zm00001d033714_P001	Maize	mitochondrion	34.66	42.17
TraesCS4A01G084900.2	Wheat	mitochondrion	17.8	41.99
EER92528	Sorghum	mitochondrion	18.27	41.94
AT1G13340.1	Thale cress	mitochondrion	40.05	41.81
Os03t0710000-01	Rice	plasma membrane	34.43	41.41
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	40.28	40.38
Zm00001d034058_P004	Maize	mitochondrion	17.8	40.0
TraesCS4D01G044800.1	Wheat	mitochondrion	32.08	39.6
Os03t0257500-01	Rice	mitochondrion	17.8	39.38
TraesCS4B01G044800.1	Wheat	mitochondrion	30.91	39.29
TraesCS4A01G269300.1	Wheat	mitochondrion	32.08	38.7
TraesCS4B01G045100.1	Wheat	mitochondrion	31.85	38.53
Zm00001d028457_P001	Maize	mitochondrion	17.8	38.0
TraesCS4D01G044400.1	Wheat	mitochondrion	30.91	37.5
GSMUA_Achr6P24100_001	Banana	mitochondrion	42.86	37.42
Bra019826.1-P	Field mustard	mitochondrion	42.15	36.44
GSMUA_Achr10P...	Banana	mitochondrion	37.47	33.06
TraesCS4B01G219400.1	Wheat	mitochondrion	20.37	32.95
Zm00001d034057_P001	Maize	mitochondrion	17.56	32.75
OQU90964	Sorghum	mitochondrion	12.65	32.34
Zm00001d047887_P001	Maize	mitochondrion	18.5	31.73
Zm00001d047886_P001	Maize	mitochondrion	18.5	31.6
Zm00001d047885_P001	Maize	mitochondrion	18.27	31.2
TraesCS4D01G219800.1	Wheat	mitochondrion	20.37	30.96
HORVU4Hr1G062260.2	Barley	plastid	20.37	30.53
TraesCS4A01G084800.1	Wheat	mitochondrion	20.14	30.5
Solyc04g007230.2.1	Tomato	mitochondrion	21.55	28.48
Zm00001d047884_P001	Maize	cytosol	8.67	25.87
Os03t0257600-01	Rice	mitochondrion	31.62	25.0
EER92527	Sorghum	mitochondrion, plastid	30.68	24.44
Zm00001d028456_P001	Maize	mitochondrion	30.21	24.29
HORVU4Hr1G062110.1	Barley	mitochondrion	30.68	23.91
TraesCS4D01G219400.3	Wheat	mitochondrion, plastid	30.21	23.89
TraesCS4A01G085000.1	Wheat	mitochondrion, plastid	29.74	23.74
Bra016733.1-P	Field mustard	mitochondrion	40.52	23.16
TraesCS4B01G219200.1	Wheat	mitochondrion, plastid	29.27	23.06
Solyc04g072560.2.1	Tomato	nucleus, unclear	23.65	19.13
Solyc02g083130.2.1	Tomato	plastid	24.12	18.97
Solyc06g066690.2.1	Tomato	nucleus	13.35	18.45
Solyc03g120120.2.1	Tomato	nucleus	17.33	15.55
Solyc12g010700.1.1	Tomato	cytosol	16.16	15.23
Solyc12g043150.1.1	Tomato	nucleus	15.93	13.33
Solyc07g032230.2.1	Tomato	nucleus	25.06	9.97
Solyc07g022860.2.1	Tomato	nucleus	10.3	7.99
Solyc07g054230.2.1	Tomato	nucleus	4.45	4.23

Protein Annotations

EnsemblPlants:Solyc05g009550.2.1	EnsemblPlantsGene:Solyc05g009550.2	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0006950	GO:GO:0006979
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF16	PFAM:PF03398
SEG:seg	UniParc:UPI0002766A77	UniProt:K4BXC9	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr5:+:3762525..3764782

Molecular Weight (calculated)

48444.0 Da

IEP (calculated)

5.186

GRAVY (calculated)

-0.737

Length

427 amino acids

Sequence
(BLAST)

001: MGRKLDALLG RNFKTSKFKA TANLAISRVT VLKNQRQARC SIARSDVVQL LNLGYHERAL LRVEQVIKEQ NMLDVFDMVE GYCLLTIERI NLIQQEKICP
101: EELKEAISSL IFAASRCGEF PELQELRGIF TSRFGKEFAA RAVELRNNCG VNTKMIQKLS TRMPSLEQRT KVLKEIAAEN NIVLKIEEIM LENTEEKEVT
201: AKRKDEPEDH ESVLPQDVDH EARRKFKDVE AAAQAAFESA AYAAAAARAA VELSRSESRD TDDPKSPSQK PRDVSDSRED LKSEFHAGEE KNNEGVEKIE
301: TSQNYGFHSE VDQFSDGDEV EEVEQKKFEK QSKRSVSVSS SDISADDILV DEVKSPRHGV IYDEIDEEVG EENRIPSLKH PKNEVFGSPV HQTGNEKEIE
401: GFTKQGAEKL DINKKPISMR TRKNYHW

Best Arabidopsis Sequence Match ( AT1G13340.1 )
(BLAST)

001: MGKKLDALLG RSFKTNKFKS LITLALTRLS ILKNQRQARL SQAISDVTEL LKLGQHEHAY HRVDQVVKDQ NTLDVLFFIH GYFTLCLDRI HLFEHNRDCP
101: EELLEAVSGL LFAASRIGEF PELQEIRNVL ISRFGKDLAA RSIELRSNCG VDPKIIQKLS TRPPPKEVRM KALKEIAAEN NIVLKLDQAS TSTEGTTNMQ
201: GTSDVSKTKL TSKDGRGEGY GLSDSVKRGK KKYKDVADAA QAAFESAAHA AEAAQAAVEL SQFSPRGHDS PGNIGGENSF HGSENKESEQ EQEGNDDSSE
301: GEGDVMSESK RSMSDSEDII DVPVMSFRED PVKLLEKDTI IYDSEEETQP SVETITISKS KDEQNRMVGS NRADTRHVDH MVRSIEDPIM RKAGLKGPVS
401: VRTRQVRGY

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q9FX63]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.