CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034058_P004	Maize	mitochondrion	68.26	60.0
EER92528	Sorghum	mitochondrion	61.68	55.38
Os03t0257500-01	Rice	mitochondrion	57.48	49.74
Zm00001d034057_P001	Maize	mitochondrion	67.66	49.34
HORVU4Hr1G062250.1	Barley	mitochondrion	53.89	48.91
TraesCS4B01G219300.1	Wheat	mitochondrion	52.69	47.83
TraesCS4D01G219500.2	Wheat	mitochondrion	52.1	47.28
TraesCS4A01G084900.2	Wheat	mitochondrion	50.3	46.41
TraesCS4B01G219400.1	Wheat	mitochondrion	62.87	39.77
TraesCS4D01G219800.1	Wheat	mitochondrion	62.87	37.37
TraesCS4A01G084800.1	Wheat	mitochondrion	62.28	36.88
HORVU4Hr1G062260.2	Barley	plastid	62.28	36.49
VIT_14s0006g03050.t01	Wine grape	mitochondrion	23.95	25.64
Solyc02g085830.2.1	Tomato	mitochondrion	22.75	18.27
PGSC0003DMT400032944	Potato	mitochondrion	22.75	18.27
EER93588	Sorghum	mitochondrion	34.13	16.67
EER92527	Sorghum	mitochondrion, plastid	52.69	16.42
KXG19452	Sorghum	mitochondrion	26.95	16.36
KXG33152	Sorghum	mitochondrion	27.54	14.33
PGSC0003DMT400033769	Potato	mitochondrion	32.93	12.88
KRH46919	Soybean	mitochondrion	31.14	12.68
KRH75395	Soybean	mitochondrion	30.54	12.66
Solyc05g009550.2.1	Tomato	mitochondrion	32.34	12.65
KRH45249	Soybean	mitochondrion	29.94	12.63
KRH01764	Soybean	mitochondrion	32.34	12.22
CDY21093	Canola	mitochondrion	28.74	12.15
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	30.54	11.97
GSMUA_Achr6P24100_001	Banana	mitochondrion	34.73	11.86
CDY19375	Canola	mitochondrion	28.74	11.76
CDY50176	Canola	mitochondrion	26.95	11.42
AT1G13340.1	Thale cress	mitochondrion	26.95	11.0
GSMUA_Achr10P...	Banana	mitochondrion	29.94	10.33
VIT_01s0011g03330.t01	Wine grape	mitochondrion	28.74	10.26
EER99304	Sorghum	plastid	27.54	9.58
Bra019826.1-P	Field mustard	mitochondrion	28.14	9.51
KXG24567	Sorghum	cytosol, plastid	27.54	8.91
Bra016733.1-P	Field mustard	mitochondrion	28.74	6.43
EES04550	Sorghum	nucleus	20.96	5.12
KXG20673	Sorghum	cytosol, nucleus, plastid	19.76	4.2
EES03498	Sorghum	nucleus, plastid	22.75	3.07

Protein Annotations

EnsemblPlants:OQU90964	EnsemblPlantsGene:SORBI_3001G085450	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF26	ProteinID:OQU90964	ProteinID:OQU90964.1	UniParc:UPI000B8BA193
UniProt:A0A1Z5S4X5	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:6608026..6609059

Molecular Weight (calculated)

18664.6 Da

IEP (calculated)

6.754

GRAVY (calculated)

-0.256

Length

167 amino acids

Sequence
(BLAST)

001: MRFFHGKTSK QISTPFACSS RVKKLLELAL SCLAVARSPR LARKSICRSA EQIIEEDNML QSLDIIELYC KRLVEHATQL EKPEWCADLP ELQFARTILE
101: DKFGSDDLAA AAKEGTGILV WKLSGGRTNM ELKKKVVNEI ATENNVMVES SELQEAIEHG NIGRSPC

Best Arabidopsis Sequence Match ( AT4G35730.1 )
(BLAST)

001: MTAAEVASAQ TKKLMKFSLS LFRRGFNSSK CKTAAKMAVA RIKLIRNKRL VVVKQMRRDI AVLLQSGQDA TARIRVEHVI REQNIQAANE IIELFCELIV
101: SRLTIITKQK QCPVDLKEGI ASLIFAAPRC SEIPELGDLR DIFAKKYGKD FVSAATDLRP SCGVNRMLID KLSVRNPGGE YKLKIMKEIA KEFQVDWDTT
201: ETEQELLKPQ EESIDGPRKF VSASSLPVNR AAINEPIDPT KAVPRSTSSM SINTHYHDTE SAAEAATELA KQAVAAAQVA SLLATRRDSS NKEFSVSSDH
301: STHQKDSQYM DHHHHHPGSR RQSRDSETSS YYAKPGAENR GMGRRHSYNN PGINESDYEE EYTNTEAEAK ETMRRRHSYN PRSVPPPATS EIKFDESDYY
401: EEETEPDEPS QGRVSSLPPN RAPPQAPQSG ESRQDSSGHQ VHPKLPDYDI LAARFEAIRH SKGPLI

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4JNS8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.