CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97813

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G79910.1	EER97813	AT2G39760.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d053852_P001	Maize	nucleus	86.53	86.28
Os02t0159200-01	Rice	nucleus	66.03	66.81
TraesCS6D01G122600.1	Wheat	cytosol, nucleus, plastid	63.69	60.84
TraesCS6A01G133000.1	Wheat	cytosol, nucleus, plastid	62.96	60.14
TraesCS6B01G161300.1	Wheat	cytosol, nucleus, plastid	62.52	59.89
HORVU6Hr1G025460.3	Barley	nucleus	63.69	59.1
GSMUA_Achr5P23530_001	Banana	nucleus	13.47	51.4
KRH06586	Soybean	cytosol	4.39	49.18
GSMUA_Achr6P29590_001	Banana	cytosol	27.09	40.39
KRG89505	Soybean	mitochondrion	11.13	40.21
KXG20673	Sorghum	cytosol, nucleus, plastid	45.1	39.24
CDX87282	Canola	cytosol	10.83	36.63
PGSC0003DMT400042551	Potato	nucleus	15.67	34.63
VIT_09s0002g04580.t01	Wine grape	nucleus	25.04	34.13
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	32.65	33.14
GSMUA_Achr8P15690_001	Banana	mitochondrion	32.5	33.13
Solyc06g066690.2.1	Tomato	nucleus	14.93	33.01
CDX87899	Canola	nucleus	13.32	32.97
CDY52976	Canola	mitochondrion	14.79	32.69
CDY49898	Canola	mitochondrion	12.45	31.02
KRH44367	Soybean	mitochondrion	14.35	30.43
KRH23458	Soybean	mitochondrion	17.72	30.33
Solyc03g120120.2.1	Tomato	nucleus	21.08	30.25
AT1G79910.1	Thale cress	nucleus	16.69	29.92
CDY49897	Canola	nucleus	11.71	29.85
KRH47048	Soybean	mitochondrion	16.54	29.58
PGSC0003DMT400014529	Potato	nucleus	19.47	29.56
CDX87900	Canola	mitochondrion	12.45	29.51
Bra035204.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	7.47	29.48
CDY37561	Canola	nucleus	16.25	29.44
CDY41108	Canola	nucleus	16.25	29.37
Bra008502.1-P	Field mustard	nucleus	16.25	29.29
Solyc12g043150.1.1	Tomato	nucleus	21.82	29.22
AT1G52315.1	Thale cress	mitochondrion	14.79	29.11
EER92528	Sorghum	mitochondrion	7.91	29.03
Bra018962.1-P	Field mustard	extracellular, vacuole	14.79	28.37
PGSC0003DMT400092826	Potato	nucleus	16.11	25.88
CDX68838	Canola	nucleus	23.43	25.4
VIT_11s0016g04010.t01	Wine grape	nucleus	26.94	25.34
CDX75238	Canola	nucleus	22.99	24.88
KRH48400	Soybean	mitochondrion, nucleus	26.21	24.35
KRH39280	Soybean	mitochondrion, nucleus	25.77	23.95
KXG33152	Sorghum	mitochondrion	10.4	22.12
AT4G32350.1	Thale cress	nucleus	23.57	21.99
KRH60286	Soybean	nucleus	24.6	21.93
KXG19452	Sorghum	mitochondrion	8.78	21.82
KRH41578	Soybean	nucleus	24.74	21.18
PGSC0003DMT400022180	Potato	nucleus	16.98	21.01
OQU90964	Sorghum	mitochondrion	5.12	20.96
Solyc07g022860.2.1	Tomato	nucleus	16.4	20.33
EER99304	Sorghum	plastid	12.88	18.33
EER93588	Sorghum	mitochondrion	8.78	17.54
Bra030391.1-P	Field mustard	nucleus	12.01	16.4
KXG24567	Sorghum	cytosol, plastid	11.42	15.12
EER92527	Sorghum	mitochondrion, plastid	10.4	13.25
EES03498	Sorghum	nucleus, plastid	13.62	7.52

Protein Annotations

EnsemblPlants:EES04550	EnsemblPlantsGene:SORBI_3004G048000	EntrezGene:8074661	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF14	PFAM:PF03398	ProteinID:EES04550
ProteinID:EES04550.1	RefSeq:XP_002451574.1	SEG:seg	unigene:Sbi.9255	UniParc:UPI0001A85553	UniProt:C5XVD7
MapMan:35.2	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3885861..3890083

Molecular Weight (calculated)

77343.5 Da

IEP (calculated)

9.612

GRAVY (calculated)

-1.045

Length

683 amino acids

Sequence
(BLAST)

001: MFDSLLNSKF YNKCKHAIKC TRTRLDLLRR KKQAMVKFLK KDVGDLLTSG LESHAFARME GLIVEMNQAS CYDMIEQYCE YIVKQLNHMQ KESECPQEAL
101: EAVSTLIFAA ARFPDLPELC DLRHIFTEKY GSSVEPFVNS EFVQNLQSKS FTNEEKLRVM KRVAEEFSVP FDSRALEWKI TCGSQNKHDL PKKSSLKQEM
201: EASAREIQGR VHERKTKAMP EGYEQKQEIN VKPKDIHVVP DGIGQLGEKS RKKYSDKPSE KKHMDNPLPP LDMKEKNGQK EMKKYDKKDS HHRRELMDAE
301: VLDLNGLKKQ DVGVVKLSGG PDRSWGHADL GLKTLGLEKQ EIDSTCTLNG KTVNRAPPYS KPYRASMGEK VAEDRQPVPE KAANMRPPYV KPNFEKHANQ
401: GANGYKLSGT EEIGHQKREP IYDPVSVRSR IPKPPAHVDD YAGMANEEKM ANQATDGRRR HSSKRNGAYD NYDHKGGHVL PLEGMGVDDD INNARPFHRI
501: PSERRKHRSR RNGSTSGSDY NGASEDHESD GDDANTAIDF GNLLPRAPSS HRKHRSRSAD PRKGGRDEEE KMMDKLLMHY SKKGLDREEH KERVKSRIPR
601: PRADQRADDG AGELSNNKEV ASAHRPERAV SLPSESASPK AKPKPKAPVR SLSMQPEMSR GNVHPSMPDF DELAARISAL RNA

Best Arabidopsis Sequence Match ( AT4G32350.3 )
(BLAST)

001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.