Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr7P10650_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | GSMUA_Achr10P... | AT2G39760.1 | 21798944 |
| AT1G79910.1 | GSMUA_Achr7P10650_001 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr5P23530_001 | Banana | nucleus | 22.93 | 58.66 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 55.68 | 38.06 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 55.46 | 37.74 |
| KRH06586 | Soybean | cytosol | 5.02 | 37.7 |
| CDX87282 | Canola | cytosol | 16.59 | 37.62 |
| KRG89505 | Soybean | mitochondrion | 15.5 | 37.57 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 12.23 | 32.37 |
| PGSC0003DMT400042551 | Potato | nucleus | 21.4 | 31.72 |
| Solyc06g066690.2.1 | Tomato | nucleus | 21.18 | 31.39 |
| KRH23458 | Soybean | mitochondrion | 25.76 | 29.57 |
| CDY52976 | Canola | mitochondrion | 19.65 | 29.13 |
| CDY49897 | Canola | nucleus | 16.81 | 28.73 |
| CDX87899 | Canola | nucleus | 17.25 | 28.62 |
| Os02t0159200-01 | Rice | nucleus | 41.48 | 28.15 |
| KRH44367 | Soybean | mitochondrion | 19.43 | 27.64 |
| CDY49898 | Canola | mitochondrion | 16.38 | 27.37 |
| CDY37561 | Canola | nucleus | 22.49 | 27.32 |
| EES04550 | Sorghum | nucleus | 40.39 | 27.09 |
| CDY41108 | Canola | nucleus | 22.27 | 26.98 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 29.26 | 26.75 |
| KRH47048 | Soybean | mitochondrion | 22.05 | 26.44 |
| Bra008502.1-P | Field mustard | nucleus | 21.83 | 26.39 |
| Solyc12g043150.1.1 | Tomato | nucleus | 29.26 | 26.27 |
| AT1G79910.1 | Thale cress | nucleus | 21.83 | 26.25 |
| CDX87900 | Canola | mitochondrion | 16.38 | 26.04 |
| Zm00001d053852_P001 | Maize | nucleus | 38.86 | 25.99 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 40.39 | 25.87 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 40.17 | 25.81 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 19.87 | 25.56 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 39.74 | 25.45 |
| Solyc03g120120.2.1 | Tomato | nucleus | 26.2 | 25.21 |
| Os06t0687000-00 | Rice | mitochondrion | 39.52 | 24.83 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 39.74 | 24.73 |
| PGSC0003DMT400014529 | Potato | nucleus | 24.24 | 24.67 |
| AT1G52315.1 | Thale cress | mitochondrion | 18.56 | 24.5 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 37.12 | 23.98 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 37.77 | 23.83 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 37.77 | 23.83 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 37.34 | 23.52 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 39.3 | 22.93 |
| PGSC0003DMT400092826 | Potato | nucleus | 20.96 | 22.59 |
| Zm00001d014521_P001 | Maize | mitochondrion | 35.37 | 21.01 |
| CDX75238 | Canola | nucleus | 28.38 | 20.6 |
| CDX68838 | Canola | nucleus | 28.17 | 20.48 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 30.57 | 19.28 |
| GSMUA_Achr3P29510_001 | Banana | mitochondrion | 13.32 | 18.71 |
| KRH39280 | Soybean | mitochondrion, nucleus | 29.91 | 18.64 |
| KRH48400 | Soybean | mitochondrion, nucleus | 29.48 | 18.37 |
| GSMUA_Achr9P21370_001 | Banana | mitochondrion | 12.88 | 18.04 |
| PGSC0003DMT400022180 | Potato | nucleus | 20.96 | 17.39 |
| AT4G32350.1 | Thale cress | nucleus | 27.73 | 17.35 |
| Solyc07g022860.2.1 | Tomato | nucleus | 20.74 | 17.24 |
| GSMUA_Achr3P26880_001 | Banana | mitochondrion | 16.16 | 17.13 |
| KRH60286 | Soybean | nucleus | 27.07 | 16.19 |
| KRH41578 | Soybean | nucleus | 27.07 | 15.54 |
| Bra030391.1-P | Field mustard | nucleus | 15.94 | 14.6 |
| GSMUA_Achr5P23420_001 | Banana | mitochondrion | 15.5 | 14.49 |
| GSMUA_Achr6P07700_001 | Banana | cytosol, mitochondrion, nucleus | 13.1 | 14.08 |
| GSMUA_Achr6P02830_001 | Banana | cytosol | 16.38 | 12.76 |
| GSMUA_Achr6P24100_001 | Banana | mitochondrion | 12.88 | 12.07 |
| GSMUA_Achr10P... | Banana | mitochondrion | 12.66 | 11.98 |
| Zm00001d036913_P001 | Maize | cytosol | 12.66 | 9.49 |
| GSMUA_Achr1P14380_001 | Banana | nucleus | 20.31 | 7.47 |
| Zm00001d051744_P001 | Maize | nucleus | 8.08 | 7.37 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P29590_001 | EnsemblPlants:GSMUA_Achr6T29590_001 | EnsemblPlantsGene:GSMUA_Achr6G29590_001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | SEG:seg |
| UniParc:UPI000294F18A | UniProt:M0TBA4 | MapMan:35.2 | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G29590_001]
Coordinates
chr6:+:29810335..29812503
Molecular Weight (calculated)
50052.1 Da
IEP (calculated)
7.551
GRAVY (calculated)
-0.599
Length
458 amino acids
Sequence
(BLAST)
(BLAST)
001: MFDSLLGGKF SNKCKHAVKC IKVRMVPIWN KKQAVLRFLR KDVADLIAAG HEANAFRRID ALIVEINRAT CYDIIAQCCE IISTQLPTLQ NQKGCPQEAV
101: EAVSTLIYAA ARFPDLPELC VLRHVFAERY GSCMESFVNA EFVEKVGKKS FTREKKLQLM QDIAEEYSVR CDAKAFDHQT TSDAIREKHG SNSASAVRGE
201: QAETEEAADI HVISASLGTR QARVKPRRDH GGSCEADELE CGVRGSPEKK GVVSVNGRHV EEYGRAGYLI PPYVKPKIHG DPVAAAGHDT NEGGEEAVLR
301: GGVKPRPVSV RRKLRKPRVG ETDDGENYVK EKSADGEGRR RPAYDEADHN AASGGQYEDE EEMVLDKLLL HYSRKGTAEE GSEGRRRVGA EHFGNGGKVH
401: PLPRGAPPPP VPSESVNPAT PGATSMRPDP VDANGGRVHP SLPDYDQLAA RFAALKGT
101: EAVSTLIYAA ARFPDLPELC VLRHVFAERY GSCMESFVNA EFVEKVGKKS FTREKKLQLM QDIAEEYSVR CDAKAFDHQT TSDAIREKHG SNSASAVRGE
201: QAETEEAADI HVISASLGTR QARVKPRRDH GGSCEADELE CGVRGSPEKK GVVSVNGRHV EEYGRAGYLI PPYVKPKIHG DPVAAAGHDT NEGGEEAVLR
301: GGVKPRPVSV RRKLRKPRVG ETDDGENYVK EKSADGEGRR RPAYDEADHN AASGGQYEDE EEMVLDKLLL HYSRKGTAEE GSEGRRRVGA EHFGNGGKVH
401: PLPRGAPPPP VPSESVNPAT PGATSMRPDP VDANGGRVHP SLPDYDQLAA RFAALKGT
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.