Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d007888_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | Zm00001d007888_P002 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d051744_P001 | Maize | nucleus | 61.22 | 94.02 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 86.25 | 84.71 |
| Zm00001d036913_P001 | Maize | cytosol | 63.42 | 80.03 |
| Os06t0687000-00 | Rice | mitochondrion | 54.47 | 57.61 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 49.03 | 53.31 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 50.06 | 53.17 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 49.03 | 51.99 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 11.93 | 51.4 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 48.12 | 51.1 |
| Zm00001d053852_P001 | Maize | nucleus | 36.58 | 41.17 |
| KRH06586 | Soybean | cytosol | 3.24 | 40.98 |
| KRG89505 | Soybean | mitochondrion | 9.6 | 39.15 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 21.01 | 35.37 |
| CDX87282 | Canola | cytosol | 8.82 | 33.66 |
| CDX87899 | Canola | nucleus | 11.67 | 32.61 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 21.01 | 32.34 |
| CDY52976 | Canola | mitochondrion | 12.84 | 32.04 |
| KRH23458 | Soybean | mitochondrion | 16.34 | 31.58 |
| PGSC0003DMT400042551 | Potato | nucleus | 12.58 | 31.39 |
| GSMUA_Achr9P11280_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 26.72 | 30.61 |
| Solyc06g066690.2.1 | Tomato | nucleus | 12.19 | 30.42 |
| PGSC0003DMT400014529 | Potato | nucleus | 17.25 | 29.56 |
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 25.68 | 29.55 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 6.61 | 29.48 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 13.49 | 29.21 |
| CDY49898 | Canola | mitochondrion | 10.25 | 28.83 |
| AT1G52315.1 | Thale cress | mitochondrion | 12.97 | 28.82 |
| Solyc03g120120.2.1 | Tomato | nucleus | 17.64 | 28.57 |
| CDY49897 | Canola | nucleus | 9.86 | 28.36 |
| AT1G79910.1 | Thale cress | nucleus | 14.01 | 28.35 |
| KRH44367 | Soybean | mitochondrion | 11.8 | 28.26 |
| CDY37561 | Canola | nucleus | 13.75 | 28.12 |
| CDY41108 | Canola | nucleus | 13.75 | 28.04 |
| Bra008502.1-P | Field mustard | nucleus | 13.75 | 27.97 |
| CDX87900 | Canola | mitochondrion | 10.25 | 27.43 |
| KRH47048 | Soybean | mitochondrion | 13.49 | 27.23 |
| Solyc12g043150.1.1 | Tomato | nucleus | 17.77 | 26.86 |
| Zm00001d052541_P001 | Maize | extracellular | 4.93 | 26.39 |
| PGSC0003DMT400092826 | Potato | nucleus | 13.88 | 25.18 |
| Zm00001d034058_P004 | Maize | mitochondrion | 6.1 | 24.74 |
| Zm00001d028457_P001 | Maize | mitochondrion | 5.97 | 23.0 |
| Zm00001d028142_P001 | Maize | cytosol | 2.98 | 23.0 |
| Zm00001d048482_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 2.98 | 23.0 |
| CDX75238 | Canola | nucleus | 18.42 | 22.5 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 21.14 | 22.45 |
| CDX68838 | Canola | nucleus | 18.29 | 22.38 |
| Solyc07g022860.2.1 | Tomato | nucleus | 15.82 | 22.14 |
| PGSC0003DMT400022180 | Potato | nucleus | 15.69 | 21.92 |
| KRH39280 | Soybean | mitochondrion, nucleus | 20.1 | 21.09 |
| KRH48400 | Soybean | mitochondrion, nucleus | 19.97 | 20.95 |
| KRH60286 | Soybean | nucleus | 20.75 | 20.89 |
| Zm00001d047885_P001 | Maize | mitochondrion | 6.74 | 20.8 |
| Zm00001d034057_P001 | Maize | mitochondrion | 6.1 | 20.52 |
| Zm00001d047886_P001 | Maize | mitochondrion | 6.61 | 20.4 |
| Zm00001d047887_P001 | Maize | mitochondrion | 6.49 | 20.08 |
| KRH41578 | Soybean | nucleus | 20.49 | 19.8 |
| AT4G32350.1 | Thale cress | nucleus | 18.55 | 19.54 |
| Zm00001d047884_P001 | Maize | cytosol | 3.37 | 18.18 |
| Zm00001d043813_P001 | Maize | mitochondrion | 7.52 | 18.07 |
| Bra030391.1-P | Field mustard | nucleus | 10.12 | 15.6 |
| Zm00001d033714_P001 | Maize | mitochondrion | 6.87 | 15.1 |
| Zm00001d021453_P002 | Maize | plastid | 9.99 | 14.72 |
| Zm00001d028456_P001 | Maize | mitochondrion | 8.82 | 12.81 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 8.95 | 12.64 |
| Zm00001d024425_P003 | Maize | cytosol | 9.21 | 12.52 |
| Zm00001d011684_P002 | Maize | nucleus, plastid | 11.02 | 7.02 |
Protein Annotations
| EnsemblPlants:Zm00001d014521_P001 | EnsemblPlants:Zm00001d014521_T001 | EnsemblPlantsGene:Zm00001d014521 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF40 | PFAM:PF03398 |
| ProteinID:AQK66461.1 | UniParc:UPI0008431BA0 | UniProt:A0A1D6GTZ6 | MapMan:35.2 | : | : |
Description
Regulator of Vps4 activity in the MVB pathway protein
Coordinates
chr5:-:51451171..51454857
Molecular Weight (calculated)
86496.1 Da
IEP (calculated)
8.271
GRAVY (calculated)
-0.890
Length
771 amino acids
Sequence
(BLAST)
(BLAST)
001: MGCKHAFKCI RTRMALIRRK KHAMIRFLKK DVADLLANGL DTHAFRRIDG LLVELNHASC YDMIEGFCHY IGKQLGSLQK QRDCPPEFRE AVSTLIFAAA
101: RYPDLPELCD LRHIFTERYG NFVEHFVSQE FIRKLDSTEF TNEERFQVMQ SVAEELSVSF DAKELELKLW ASLQTEHDML EKGSRKPAEL AMPSSSKQIC
201: VENASCEEQE DILEKSLTRP TEPAMSLFDK TKYNGDAPCE RKNKDMLENY STKPIELATA SSNKQKVTEN VPGKRNYDAE PAHHTEKVEI QLVQKDIQSV
301: ADAHHTIDEN SRKQQPYVSD EKEHLQKPVS PVDTNRTQKD VQKLNRRAVR HLEKELMEAV ELDLNGLPKF GFGAVRFPEA EGNKTVQLNV KPNEAVRDFH
401: IEKENDEVLH CSRLPGGSEH NGGHADSGLR AQGLENQGHP VSPLSGNTRK KAPYTKLNAV NIKNPTEKQA NNGFLHDKPQ HLADLGYPVQ KGQGDPERAL
501: TMLPPYVEPK SNMQPVNDDP EKQTPSGYRK PNIPGQTDHL ENKNVLRPVS VRRRTAKLPA PVDAYVEVPN NAKVTSQTPK SHRSHSSRRN GAKDDQNRKC
601: NGTDDVGSET NAQITPSSQS KHVGRRNGAL NHKNNSGRLM QRMQPEAAET AIDCGNLLPR NANGQMRHNS GRGGDMDEEE RMMDKLLMHY SKKGSDLTNN
701: ETHTDAAQKV SLHPTGRAIS LPPESVGPSK DAKVPARCTS LQPEGPRSAH VHPKMPDFDE LAARVKALRK A
101: RYPDLPELCD LRHIFTERYG NFVEHFVSQE FIRKLDSTEF TNEERFQVMQ SVAEELSVSF DAKELELKLW ASLQTEHDML EKGSRKPAEL AMPSSSKQIC
201: VENASCEEQE DILEKSLTRP TEPAMSLFDK TKYNGDAPCE RKNKDMLENY STKPIELATA SSNKQKVTEN VPGKRNYDAE PAHHTEKVEI QLVQKDIQSV
301: ADAHHTIDEN SRKQQPYVSD EKEHLQKPVS PVDTNRTQKD VQKLNRRAVR HLEKELMEAV ELDLNGLPKF GFGAVRFPEA EGNKTVQLNV KPNEAVRDFH
401: IEKENDEVLH CSRLPGGSEH NGGHADSGLR AQGLENQGHP VSPLSGNTRK KAPYTKLNAV NIKNPTEKQA NNGFLHDKPQ HLADLGYPVQ KGQGDPERAL
501: TMLPPYVEPK SNMQPVNDDP EKQTPSGYRK PNIPGQTDHL ENKNVLRPVS VRRRTAKLPA PVDAYVEVPN NAKVTSQTPK SHRSHSSRRN GAKDDQNRKC
601: NGTDDVGSET NAQITPSSQS KHVGRRNGAL NHKNNSGRLM QRMQPEAAET AIDCGNLLPR NANGQMRHNS GRGGDMDEEE RMMDKLLMHY SKKGSDLTNN
701: ETHTDAAQKV SLHPTGRAIS LPPESVGPSK DAKVPARCTS LQPEGPRSAH VHPKMPDFDE LAARVKALRK A
001: MFDGLFKPKF YTKCKSLVKI TKTRVDTVKR KKNSVCKYLK NDIVDLLKNS LDYNAYGRAE GLIEEKRRLA CYEFLEQFCN CVASNVSLLQ KSIRCPDECR
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
101: EAISSLVYAA ARVSEVPELR DLRSLFAERY GNTLDQFVNP EFVERFKAEP PSKEMKVELL QEIAREYSIK WDAKSLEQRL YTPPHHHHVH TETEEPKTEK
201: TNSEPEKTME KRSSLSFHGR EDSMDDSNKS IMSTSEEDSM STSGSCMTGP EDDPEMKPFY YRFMTPAPYT KPKIEKQESL PEKMTTSHLM DTESPTGGKP
301: KPRSVRRRFA NPPPEAETEG EALKLKVESK NMMRASESMG KASGEGFRRM SRRTASWQHK PSSCVPDFDE VAARVDALSR Y
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8L402]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.