Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr7P10650_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G79910.1 | GSMUA_Achr10P... | AT2G39760.1 | 21798944 |
| AT1G79910.1 | GSMUA_Achr7P10650_001 | AT2G39760.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P15690_001 | Banana | mitochondrion | 58.69 | 58.96 |
| GSMUA_Achr5P23530_001 | Banana | nucleus | 15.6 | 58.66 |
| GSMUA_Achr6P29590_001 | Banana | cytosol | 37.74 | 55.46 |
| KRG89505 | Soybean | mitochondrion | 11.29 | 40.21 |
| CDX87282 | Canola | cytosol | 10.4 | 34.65 |
| Bra035204.1-P | Field mustard | cytosol, mitochondrion, nucleus, plastid | 8.77 | 34.1 |
| Os02t0159200-01 | Rice | nucleus | 34.18 | 34.07 |
| PGSC0003DMT400042551 | Potato | nucleus | 15.01 | 32.69 |
| TraesCS6B01G161300.1 | Wheat | cytosol, nucleus, plastid | 34.62 | 32.68 |
| EES04550 | Sorghum | nucleus | 33.14 | 32.65 |
| TraesCS6D01G122600.1 | Wheat | cytosol, nucleus, plastid | 34.62 | 32.59 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 34.32 | 32.31 |
| Solyc06g066690.2.1 | Tomato | nucleus | 14.56 | 31.72 |
| Zm00001d053852_P001 | Maize | nucleus | 32.24 | 31.68 |
| HORVU6Hr1G025460.3 | Barley | nucleus | 34.32 | 31.39 |
| CDX87899 | Canola | nucleus | 12.78 | 31.16 |
| Os06t0687000-00 | Rice | mitochondrion | 32.84 | 30.32 |
| VIT_09s0002g04580.t01 | Wine grape | nucleus | 22.44 | 30.14 |
| KRH06586 | Soybean | cytosol | 2.67 | 29.51 |
| CDY52976 | Canola | mitochondrion | 13.37 | 29.13 |
| KRH23458 | Soybean | mitochondrion | 17.24 | 29.07 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.16 | 28.63 |
| TraesCS7D01G433700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.76 | 28.51 |
| KXG20673 | Sorghum | cytosol, nucleus, plastid | 32.99 | 28.28 |
| TraesCS7B01G345200.1 | Wheat | cytosol, nucleus, plastid | 30.46 | 28.2 |
| CDY49897 | Canola | nucleus | 11.14 | 27.99 |
| HORVU7Hr1G101130.3 | Barley | cytosol, nucleus | 30.16 | 27.96 |
| AT1G52315.1 | Thale cress | mitochondrion | 14.26 | 27.67 |
| Solyc12g043150.1.1 | Tomato | nucleus | 20.95 | 27.65 |
| KRH47048 | Soybean | mitochondrion | 15.6 | 27.49 |
| CDY49898 | Canola | mitochondrion | 11.14 | 27.37 |
| Zm00001d014521_P001 | Maize | mitochondrion | 30.61 | 26.72 |
| PGSC0003DMT400014529 | Potato | nucleus | 17.68 | 26.44 |
| KRH44367 | Soybean | mitochondrion | 12.48 | 26.09 |
| CDX87900 | Canola | mitochondrion | 11.14 | 26.04 |
| Solyc03g120120.2.1 | Tomato | nucleus | 18.28 | 25.84 |
| AT1G79910.1 | Thale cress | nucleus | 14.56 | 25.72 |
| Bra018962.1-P | Field mustard | extracellular, vacuole | 13.52 | 25.56 |
| CDY41108 | Canola | nucleus | 14.26 | 25.4 |
| CDY37561 | Canola | nucleus | 14.12 | 25.2 |
| Bra008502.1-P | Field mustard | nucleus | 14.12 | 25.07 |
| PGSC0003DMT400092826 | Potato | nucleus | 15.45 | 24.47 |
| CDX68838 | Canola | nucleus | 19.17 | 20.48 |
| CDX75238 | Canola | nucleus | 19.02 | 20.29 |
| GSMUA_Achr3P29510_001 | Banana | mitochondrion | 9.81 | 20.25 |
| KRH39280 | Soybean | mitochondrion, nucleus | 21.4 | 19.59 |
| PGSC0003DMT400022180 | Potato | nucleus | 15.9 | 19.38 |
| VIT_11s0016g04010.t01 | Wine grape | nucleus | 20.8 | 19.28 |
| KRH48400 | Soybean | mitochondrion, nucleus | 20.95 | 19.18 |
| Solyc07g022860.2.1 | Tomato | nucleus | 15.3 | 18.69 |
| GSMUA_Achr9P21370_001 | Banana | mitochondrion | 9.06 | 18.65 |
| GSMUA_Achr3P26880_001 | Banana | mitochondrion | 11.74 | 18.29 |
| AT4G32350.1 | Thale cress | nucleus | 19.47 | 17.9 |
| KRH60286 | Soybean | nucleus | 18.57 | 16.32 |
| KRH41578 | Soybean | nucleus | 19.17 | 16.17 |
| Zm00001d036913_P001 | Maize | cytosol | 13.52 | 14.89 |
| Bra030391.1-P | Field mustard | nucleus | 10.85 | 14.6 |
| Zm00001d051744_P001 | Maize | nucleus | 10.7 | 14.34 |
| GSMUA_Achr5P23420_001 | Banana | mitochondrion | 10.1 | 13.88 |
| GSMUA_Achr6P07700_001 | Banana | cytosol, mitochondrion, nucleus | 8.62 | 13.62 |
| GSMUA_Achr10P... | Banana | mitochondrion | 9.36 | 13.02 |
| GSMUA_Achr6P02830_001 | Banana | cytosol | 11.14 | 12.76 |
| GSMUA_Achr6P24100_001 | Banana | mitochondrion | 9.06 | 12.47 |
| GSMUA_Achr1P14380_001 | Banana | nucleus | 14.41 | 7.79 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P11280_001 | EnsemblPlants:GSMUA_Achr9T11280_001 | EnsemblPlantsGene:GSMUA_Achr9G11280_001 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015031 | InterPro:Ist1 | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF14 | PFAM:PF03398 | SEG:seg |
| UniParc:UPI000294AE7B | UniProt:M0TZD7 | MapMan:35.2 | : | : | : |
Description
Putative uncharacterized protein Sb04g004110 [Source:GMGC_GENE;Acc:GSMUA_Achr9G11280_001]
Coordinates
chr9:+:7323399..7327070
Molecular Weight (calculated)
75870.4 Da
IEP (calculated)
9.298
GRAVY (calculated)
-0.956
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MFGGLLGGKF SNKCKHAAKC IKARMGPIRN RKQALVRIVR KDVANLIAAG HETKAFEKID LLIVDINHIS CYDMIEQFCE YILSQLPSLQ KQRDCPPEAM
101: ETISTLIFAA ARFSDLPELC NLRHAFTERY GSQMESCVDA EFVEKFQKKS FPKEKKLQLM QNIADEFSVR WDSKTLGHQS HNAMAHGSTQ PKDVAPSHTE
201: NNGASPAQVT IQEAIRSKGK YGSNPIGVVQ RQQVAMELDN IQVISAMSSR QSHDPVEKTQ KVVVSHDRVD TEPYQTKNAA PSYVKPRRDR DGIHKDDLSR
301: SRAKKVQNEL DPSTEKPQVG SVKSWNVKPG TMDLPDTKSN GDEYHVEETR RHGIVPPYTK VNEIKNGNHV EERSGNVPEY DSLQRHEEGS HPTGTEKRSV
401: RPATNNGRTA YVIPPYVKPR FNDVDTNADK TDRNTGISLD KSDGTEDADH RNEQVVHDEK PKPVSVRRKF QKPPVTETNG STIDVEKPTS HAPGGQRRYK
501: SRPSTNTNDD NYVEEKATIR ESRPPIDDEM SNSIDYGKLL HRAPDGRRRH GGRHIAAVYD EEEMVMDNLL LRYSRKGAAK EPSKERTRAR TPTTNHVDPD
601: RVENPGNDKI HPVPREKVPP PERILSLPME PVTPAKVKEP ARVTSMQPSG GRLHPKLPEY DYFAARLTDL KKT
101: ETISTLIFAA ARFSDLPELC NLRHAFTERY GSQMESCVDA EFVEKFQKKS FPKEKKLQLM QNIADEFSVR WDSKTLGHQS HNAMAHGSTQ PKDVAPSHTE
201: NNGASPAQVT IQEAIRSKGK YGSNPIGVVQ RQQVAMELDN IQVISAMSSR QSHDPVEKTQ KVVVSHDRVD TEPYQTKNAA PSYVKPRRDR DGIHKDDLSR
301: SRAKKVQNEL DPSTEKPQVG SVKSWNVKPG TMDLPDTKSN GDEYHVEETR RHGIVPPYTK VNEIKNGNHV EERSGNVPEY DSLQRHEEGS HPTGTEKRSV
401: RPATNNGRTA YVIPPYVKPR FNDVDTNADK TDRNTGISLD KSDGTEDADH RNEQVVHDEK PKPVSVRRKF QKPPVTETNG STIDVEKPTS HAPGGQRRYK
501: SRPSTNTNDD NYVEEKATIR ESRPPIDDEM SNSIDYGKLL HRAPDGRRRH GGRHIAAVYD EEEMVMDNLL LRYSRKGAAK EPSKERTRAR TPTTNHVDPD
601: RVENPGNDKI HPVPREKVPP PERILSLPME PVTPAKVKEP ARVTSMQPSG GRLHPKLPEY DYFAARLTDL KKT
001: MFDGFLGRGF APKGKPLIKL TKNRIDVLRR KRNATIKFLK RDLADLIING HDYNAFSRAG GLLDELRYLW SLDFVEQTCD FVYKQLSTMQ KTPECPEDCR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
101: EAISSLMFAA SGFSELPELR ELRQMFHEKY TDSLALFVNQ ELVENMSSKP FSMEKKVKLM EDVALEFSIR WDSKDFEKRI VRQNSISVME TPKSTNDKYK
201: PVDRNMALPK REEFEGSENG VSLNRKTAEA SERRDPLFQS DKESYQNGLR GNQRGLTYKE RSENVLHASR SESKDNKAER KEFYLHSKQN PAREKHQPIF
301: NEGDTIVMKV NYGNLGQGNG HRPGVVDAHK KTEFVASERK EFYSQSKQEP SRERHQPIFN DGDTIVMKVK HENHVQGNGH KNGVVDLHKK IEVNASEKLK
401: SSSSKRADKL VIGFKQESFF QGYKHEKNEE HAHQKVEDST SRPPKPNSKS KRAESINPGS RHHNDRESKE NAVLVGKSTE EDPSGDNVKG GEYEYDHANP
501: ARKVEERETE RMKSPFYKSL PPPYVKKSIA KARHEKAEAL DNPKARFDGE EGNHPDNGKN VYGAERRNGA GHHEVNDIDN ASLKRQTNRR KHIVESGGDD
601: HISSRRRENS RKGLQVLIDE DEKDSEEKMM DKLLMHYSKK PSSYEKDNVQ EESKSRRTHL KKGESDEEMM IHQPARSRSL PAEQLAGPSE PAKTFARAAS
701: FQPERSSEAK HVHPKLPNYD DLAARFAELK GR
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:Q8RXT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.