Factsheet for GSMUA_Achr3P29510_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P21370_001	Banana	mitochondrion	77.3	77.06
Zm00001d052541_P001	Maize	extracellular	31.29	70.83
Os01t0687700-01	Rice	mitochondrion, plasma membrane	62.88	64.26
TraesCS3D01G263400.1	Wheat	mitochondrion, plastid	61.96	63.32
KXG33152	Sorghum	mitochondrion	62.27	63.24
TraesCS3B01G296700.1	Wheat	mitochondrion, plastid	61.66	63.01
TraesCS3A01G263500.1	Wheat	mitochondrion, plastid	61.35	62.7
Zm00001d043813_P001	Maize	mitochondrion	61.66	62.62
KRG90825	Soybean	mitochondrion	57.67	58.02
KRH35947	Soybean	mitochondrion	57.36	57.72
VIT_01s0011g03610.t01	Wine grape	mitochondrion	57.67	57.14
KXG19452	Sorghum	mitochondrion	47.55	56.36
Solyc04g007230.2.1	Tomato	mitochondrion	54.91	55.42
HORVU3Hr1G063860.1	Barley	plastid	61.35	55.1
Bra012478.1-P	Field mustard	mitochondrion	50.92	51.39
CDY58595	Canola	mitochondrion	50.92	51.39
AT1G25420.1	Thale cress	mitochondrion	50.92	51.39
CDY53122	Canola	mitochondrion	50.31	50.77
GSMUA_Achr5P23530_001	Banana	nucleus	16.87	30.73
GSMUA_Achr5P23420_001	Banana	mitochondrion	43.25	28.78
GSMUA_Achr3P26880_001	Banana	mitochondrion	35.89	27.08
GSMUA_Achr6P02830_001	Banana	cytosol	45.09	25.0
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	27.61	21.13
GSMUA_Achr10P...	Banana	mitochondrion	28.53	19.21
GSMUA_Achr6P24100_001	Banana	mitochondrion	28.53	19.02
GSMUA_Achr6P29590_001	Banana	cytosol	18.71	13.32
GSMUA_Achr1P14380_001	Banana	nucleus	38.96	10.2
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	20.25	9.81
GSMUA_Achr8P15690_001	Banana	mitochondrion	19.94	9.7

Protein Annotations

EnsemblPlants:GSMUA_Achr3P29510_001	EnsemblPlants:GSMUA_Achr3T29510_001	EnsemblPlantsGene:GSMUA_Achr3G29510_001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	PANTHER:PTHR12161	PANTHER:PTHR12161:SF28	PFAM:PF03398	SEG:seg
UniParc:UPI000295C35A	UniProt:M0SIW7	MapMan:35.2	:	:	:

Description

DUF292 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G29510_001]

Coordinates

chr3:-:28618996..28626552

Molecular Weight (calculated)

35930.9 Da

IEP (calculated)

8.108

GRAVY (calculated)

-0.261

Length

326 amino acids

Sequence
(BLAST)

001: MSALNSLFNR APFGTRCKTC LNLAISRIKL LRNKRELQLK QMRKEISQYI QTGQEAIARI RVEYIIREQN ILAAYEIIEL FCEFVLARVP VLESQRDCPL
101: ELQEAISSII FASPRCSDLP ELLHIRNLFS TKYGKEFVAA ASELRPESNV NRMIIEKLTA RAPPAELKIK VLKAIAQEYN LVWDSSSTEA ELSKNHEDLL
201: DGLNPTNSQA TVIASSTGTS QKDGLPVSPV RENRTEQLPQ TSIPSVNNLS SLASKISVSD DGKADAVRSE TEVLSIDKTS CSSQSSSDVL EKARAAIASA
301: ERASAAAHAA AELVKVKLPR QSNNYS

Best Arabidopsis Sequence Match ( AT1G25420.1 )
(BLAST)

001: MSLLNQLFNR GIFGAKCKTS LNLAIARMKL LQNKRDMQLK HMKKEIAHFL QAGQEPIARI RVEHVIREMN LWAAYEILEL FCEFILARVP ILESEKECPR
101: ELREAIASII FAAPRCSEVP DLLQIKNLFG TKYGKEFIMV ASELRPDSGV NRTIIEKLSP TSPSGAARLK MLKEIAQEYS LNWDSSATEA EFMKSHEDLL
201: GGAKQIHRQD GISESRPSQQ GYGQSSVSRE VESLPAEATQ RFQKLQAQNP VSKSMPSSKL TSAFQAPPDT RRNQTDVMEI ARAALASADR ATAAARAAAQ
301: LVNVSYGATT PTVAAEGKPL NLM

Arabidopsis Description

At1g25420/F2J7_16 [Source:UniProtKB/TrEMBL;Acc:Q9C6L2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.