Factsheet for GSMUA_Achr5P23420_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02830_001	Banana	cytosol	72.86	60.71
KXG24567	Sorghum	cytosol, plastid	55.31	52.52
KRH08570	Soybean	nucleus	54.29	50.38
TraesCS3B01G498800.1	Wheat	cytosol	52.24	50.1
KRH70215	Soybean	nucleus	54.9	50.09
HORVU3Hr1G098720.3	Barley	cytosol	52.24	49.9
TraesCS3A01G459100.1	Wheat	cytosol, plastid	52.24	49.81
TraesCS3D01G451700.1	Wheat	cytosol	51.63	49.41
VIT_18s0164g00040.t01	Wine grape	nucleus	54.29	49.35
Solyc04g072560.2.1	Tomato	nucleus, unclear	51.63	47.92
PGSC0003DMT400070850	Potato	cytosol	51.22	47.54
Os08t0175200-01	Rice	nucleus	54.29	47.42
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	52.65	47.25
Zm00001d024425_P003	Maize	cytosol	54.29	46.91
KRH35011	Soybean	mitochondrion	34.9	43.96
GSMUA_Achr3P29510_001	Banana	mitochondrion	28.78	43.25
GSMUA_Achr9P21370_001	Banana	mitochondrion	28.16	42.2
Bra036745.1-P	Field mustard	nucleus	46.94	40.64
CDY46461	Canola	cytosol, mitochondrion, nucleus	46.94	40.64
CDX91784	Canola	nucleus	47.14	39.83
CDY48635	Canola	cytosol	26.12	38.21
AT1G34220.1	Thale cress	nucleus	48.78	36.83
GSMUA_Achr5P23530_001	Banana	nucleus	12.04	32.96
GSMUA_Achr3P26880_001	Banana	mitochondrion	26.73	30.32
GSMUA_Achr6P07700_001	Banana	cytosol, mitochondrion, nucleus	21.02	24.18
GSMUA_Achr10P...	Banana	mitochondrion	21.02	21.28
GSMUA_Achr6P24100_001	Banana	mitochondrion	20.0	20.04
GSMUA_Achr6P29590_001	Banana	cytosol	14.49	15.5
GSMUA_Achr8P15690_001	Banana	mitochondrion	16.12	11.79
GSMUA_Achr1P14380_001	Banana	nucleus	29.59	11.65
GSMUA_Achr9P11280_001	Banana	cytosol, mitochondrion, nucleus, plastid	13.88	10.1

Protein Annotations

EnsemblPlants:GSMUA_Achr5P23420_001	EnsemblPlants:GSMUA_Achr5T23420_001	EnsemblPlantsGene:GSMUA_Achr5G23420_001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150
GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398
SEG:seg	UniParc:UPI000296A640	UniProt:M0T117	MapMan:35.2	:	:

Description

DUF292 domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G23420_001]

Coordinates

chr5:-:25145536..25149394

Molecular Weight (calculated)

53904.9 Da

IEP (calculated)

4.619

GRAVY (calculated)

-0.510

Length

490 amino acids

Sequence
(BLAST)

001: MSMLDAFFNK GFRGAKCKTL LKLTIPRIRL LRNRRESQLK QMRKDIAKLL EDGQEATARI RVEHIIREEN MMAAQEILEL FCELIAVRLP IIESQRECPL
101: DLKEAISTIC FAAPRCADLP ELQQVQMLFA AKYGKEFATA ATYLLPDCGV NRQVIELLSI RVPSVETKMK LLKEIAEQHE LDWDPSATEN EFRKPHEDLL
201: NGPNHVTNGS SLPLPPQKHD EHDDALSSDH TDESHIEPGS DADLDSLDLP QVPKDSVRAT IDVLSALGNV SSRPPSAAHD LGFGHPEVTK SISSEDMAQV
301: PPVEPAVSDT EPSSTSSPNQ SNAVIAANKQ FIPFLSPPPL SSFSAPPKQN EFSDPTSLSS TNVDLQDVLA AAQSAAETAE HAAIAARAAA NLAQVRLTDL
401: LAKSENSGNE SHGEGFEEQT DLANPIFHHQ QYSFGNNEKS TDYGQGQIWD SPTHRSHEPQ SSPVSEDEPY LSYPNLFASK DSDLKSDIHD

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.