Factsheet for Zm00001d024425_P003

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG24567	Sorghum	cytosol, plastid	84.66	93.02
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	80.42	83.52
TraesCS3B01G498800.1	Wheat	cytosol	69.66	77.3
TraesCS3D01G451700.1	Wheat	cytosol	68.96	76.37
HORVU3Hr1G098720.3	Barley	cytosol	68.78	76.02
TraesCS3A01G459100.1	Wheat	cytosol, plastid	68.61	75.68
Os08t0175200-01	Rice	nucleus	72.49	73.26
Zm00001d052541_P001	Maize	extracellular	14.29	56.25
GSMUA_Achr5P23420_001	Banana	mitochondrion	46.91	54.29
Zm00001d028142_P001	Maize	cytosol	9.52	54.0
Zm00001d048482_P001	Maize	cytosol, mitochondrion, nucleus, plastid	9.35	53.0
VIT_18s0164g00040.t01	Wine grape	nucleus	47.97	50.46
KRH08570	Soybean	nucleus	45.5	48.86
GSMUA_Achr6P02830_001	Banana	cytosol	50.62	48.81
KRH70215	Soybean	nucleus	45.68	48.23
PGSC0003DMT400070850	Potato	cytosol	44.62	47.92
Solyc04g072560.2.1	Tomato	nucleus, unclear	44.27	47.54
Zm00001d043813_P001	Maize	mitochondrion	25.4	44.86
KRH35011	Soybean	mitochondrion	30.34	44.22
CDY46461	Canola	cytosol, mitochondrion, nucleus	41.62	41.7
Bra036745.1-P	Field mustard	nucleus	41.62	41.7
CDY48635	Canola	cytosol	24.52	41.49
CDX91784	Canola	nucleus	41.62	40.69
AT1G34220.1	Thale cress	nucleus	43.39	37.9
Zm00001d028457_P001	Maize	mitochondrion	10.76	30.5
Zm00001d021453_P002	Maize	plastid	26.81	29.06
Zm00001d034058_P004	Maize	mitochondrion	9.7	28.95
Zm00001d033714_P001	Maize	mitochondrion	16.58	26.78
Zm00001d034057_P001	Maize	mitochondrion	9.7	24.02
Zm00001d047887_P001	Maize	mitochondrion	10.41	23.69
Zm00001d047885_P001	Maize	mitochondrion	10.23	23.2
Zm00001d047886_P001	Maize	mitochondrion	10.23	23.2
Zm00001d047884_P001	Maize	cytosol	4.76	18.88
Zm00001d028456_P001	Maize	mitochondrion	16.23	17.33
Zm00001d011684_P002	Maize	nucleus, plastid	28.57	13.38
Zm00001d053852_P001	Maize	nucleus	13.23	10.95
Zm00001d014521_P001	Maize	mitochondrion	12.52	9.21
Zm00001d036913_P001	Maize	cytosol	6.0	5.56
Zm00001d051744_P001	Maize	nucleus	3.7	4.18

Protein Annotations

EnsemblPlants:Zm00001d024425_P003	EnsemblPlants:Zm00001d024425_T003	EnsemblPlantsGene:Zm00001d024425	EntrezGene:103641204	Gene3D:1.20.1260.60	GO:GO:0006810
GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5
PFAM:PF03398	ProteinID:AQK41174.1	SEG:seg	UniParc:UPI0008457C0D	UniProt:A0A1D6IZ80	MapMan:35.2

Description

Regulator of Vps4 activity in the MVB pathway protein

Coordinates

chr10:+:70492406..70495711

Molecular Weight (calculated)

62929.5 Da

IEP (calculated)

4.663

GRAVY (calculated)

-0.409

Length

567 amino acids

Sequence
(BLAST)

001: MSMLDTFFSK GGGGGFRGAK CKTLLKLSIP RIKLLRNRRE LQLRQMRRDI AKLLEAGQEA TARIRVEHII REENMMAAQE ILELFCELIA VRLPIIEAQK
101: FAPLTEFDFT TRNCGRYLFL IKLINRFVTK NSVRDADESH SFVFPCFVGF RECPIDLKEA ISSVCFAAPR CADLPELMQV QMMFATKYGK EFVAAASELM
201: PDCGVNRQII ELLSIRPPPV DAKLKLLKEI AEEHEVDWDP SETETEFLKP HEDLLNGPTY FNVSTLPLPK EKHEETVVAS AAEQPDEDYE SDTGLDSLDL
301: PEVPKAAIRP PSDAPLTPDI CPHVQGSQSL PHEFSDPGNL EENPTAGGAF NVIQMKSLEH LVYAPSDQSN IPDLPNEKKQ FIPFASPPPV LSPSVGKAET
401: VPSPSLSPPV KPTEPEPEIL TKKIDEVTTP PVLPSDYIFT KQPEQVRTIS PSESGANIDL DDVLSAAQTA AESAERAASA ARAAANLAQL RISDLKKNSK
501: VYSNYGDSVQ KESHHQTEAT QEPVFDHQDS FTNDTQDYVS SHVPQRSSSL EDDPYFSYPN LFSAPKP

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.