Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G498800.1 | Wheat | cytosol | 95.91 | 96.48 |
| TraesCS3D01G451700.1 | Wheat | cytosol | 95.33 | 95.7 |
| HORVU3Hr1G098720.3 | Barley | cytosol | 93.39 | 93.57 |
| KXG24567 | Sorghum | cytosol, plastid | 77.82 | 77.52 |
| Os08t0175200-01 | Rice | nucleus | 77.63 | 71.12 |
| Zm00001d049479_P003 | Maize | cytosol, mitochondrion, plastid | 73.54 | 69.23 |
| Zm00001d024425_P003 | Maize | cytosol | 75.68 | 68.61 |
| GSMUA_Achr5P23420_001 | Banana | mitochondrion | 49.81 | 52.24 |
| VIT_18s0164g00040.t01 | Wine grape | nucleus | 50.78 | 48.42 |
| GSMUA_Achr6P02830_001 | Banana | cytosol | 54.86 | 47.96 |
| PGSC0003DMT400070850 | Potato | cytosol | 48.83 | 47.54 |
| Solyc04g072560.2.1 | Tomato | nucleus, unclear | 48.64 | 47.35 |
| KRH08570 | Soybean | nucleus | 47.86 | 46.59 |
| TraesCS3A01G263500.1 | Wheat | mitochondrion, plastid | 28.6 | 46.08 |
| KRH70215 | Soybean | nucleus | 48.05 | 46.0 |
| KRH35011 | Soybean | mitochondrion | 32.68 | 43.19 |
| CDY48635 | Canola | cytosol | 26.65 | 40.9 |
| CDY46461 | Canola | cytosol, mitochondrion, nucleus | 44.55 | 40.46 |
| Bra036745.1-P | Field mustard | nucleus | 44.36 | 40.28 |
| CDX91784 | Canola | nucleus | 44.75 | 39.66 |
| AT1G34220.1 | Thale cress | nucleus | 46.5 | 36.83 |
| TraesCS4A01G084900.2 | Wheat | mitochondrion | 11.67 | 33.15 |
| TraesCS5A01G346800.1 | Wheat | plastid | 29.96 | 31.75 |
| TraesCS4A01G269300.1 | Wheat | mitochondrion | 17.9 | 25.99 |
| TraesCS4A01G084800.1 | Wheat | mitochondrion | 13.04 | 23.76 |
| TraesCS4A01G085000.1 | Wheat | mitochondrion, plastid | 17.51 | 16.82 |
| TraesCS3A01G252800.1 | Wheat | cytosol | 31.91 | 14.67 |
| TraesCS6A01G133000.1 | Wheat | cytosol, nucleus, plastid | 14.59 | 10.49 |
| TraesCS7A01G445700.1 | Wheat | cytosol, mitochondrion, nucleus | 14.2 | 10.3 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G459100.1 | EnsemblPlantsGene:TraesCS3A01G459100 | Gene3D:1.20.1260.60 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015031 |
| InterPro:Ist1 | ncoils:Coil | PANTHER:PTHR12161 | PANTHER:PTHR12161:SF5 | PFAM:PF03398 | SEG:seg |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3A:-:695729184..695732103
Molecular Weight (calculated)
56510.5 Da
IEP (calculated)
4.653
GRAVY (calculated)
-0.490
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMLEAFFGK GGAAAGGGFR AAKCKTLLKL SIPRIKLLRN RRELQLRQMR RDIAKLLEAG QEATARIRVE HIIREENMMA AQEILELFCE LVAVRLPIIE
101: AQKECPIDLK EAISSICFAA PRCSDLPELM QVQMMFATKY GKEFAAAAAE LMPDSGVNRQ IIELLSIRPP PVDIKMKLLK EIAEEHEIDW DPSATETEYL
201: KPHEDLLNGP TYFSGSTLPL PKEKHVEPVA ASATDEPGED YESDGGFDSL DLPEVPKAAI RPASGTQSTP DIGPHVQSSQ SSAHDFSNPP DLEENPTADA
301: AFCNYLKSSE PPVSPQFAQP RMPALPDEKK QFVPFVSPPP FASAASSMER SDSIPLNSPP VKPTEQEFFT RPVDEVTAPQ TPKDLNMFSN RPEQVHSISP
401: IESGENIDMD GVVSAAQTAA DSAERAASAA RAAANLAKLC IADLKKNTRV YESHSDDSQK ESHHQTEVTQ KPVFDHQDSF SNDFEGYAPS HVPQRSTSLE
501: DDPFNYPNLF SSKP
101: AQKECPIDLK EAISSICFAA PRCSDLPELM QVQMMFATKY GKEFAAAAAE LMPDSGVNRQ IIELLSIRPP PVDIKMKLLK EIAEEHEIDW DPSATETEYL
201: KPHEDLLNGP TYFSGSTLPL PKEKHVEPVA ASATDEPGED YESDGGFDSL DLPEVPKAAI RPASGTQSTP DIGPHVQSSQ SSAHDFSNPP DLEENPTADA
301: AFCNYLKSSE PPVSPQFAQP RMPALPDEKK QFVPFVSPPP FASAASSMER SDSIPLNSPP VKPTEQEFFT RPVDEVTAPQ TPKDLNMFSN RPEQVHSISP
401: IESGENIDMD GVVSAAQTAA DSAERAASAA RAAANLAKLC IADLKKNTRV YESHSDDSQK ESHHQTEVTQ KPVFDHQDSF SNDFEGYAPS HVPQRSTSLE
501: DDPFNYPNLF SSKP
001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKTESLIFI AWFSLVETRD LFMFLYFSNS ILQLVELLSV RAPSPETKLK
201: LLKEIAEEHE LDWDPASTET DLFKSHEDLL DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS
301: ASYEHTSHDL PFDSENAGVE KTASKRDEHP AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS
401: AERAASAARS AASLAQLRIN ELTRKTSDQY PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS
501: FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS
601: PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH DPSSGSHSFS DNTRPAHDS
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKTESLIFI AWFSLVETRD LFMFLYFSNS ILQLVELLSV RAPSPETKLK
201: LLKEIAEEHE LDWDPASTET DLFKSHEDLL DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS
301: ASYEHTSHDL PFDSENAGVE KTASKRDEHP AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS
401: AERAASAARS AASLAQLRIN ELTRKTSDQY PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS
501: FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS
601: PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH DPSSGSHSFS DNTRPAHDS
Arabidopsis Description
Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.