CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036745.1-P	Field mustard	nucleus	99.12	99.12
CDX91784	Canola	nucleus	96.64	94.31
AT1G34220.1	Thale cress	nucleus	78.45	68.41
KRH70215	Soybean	nucleus	50.88	53.63
VIT_18s0164g00040.t01	Wine grape	nucleus	51.06	53.62
KRH08570	Soybean	nucleus	49.65	53.22
Solyc04g072560.2.1	Tomato	nucleus, unclear	49.29	52.84
PGSC0003DMT400070850	Potato	cytosol	49.29	52.84
CDY04642	Canola	cytosol	13.43	50.67
KRH35011	Soybean	mitochondrion	33.04	48.07
CDY48635	Canola	cytosol	28.27	47.76
GSMUA_Achr5P23420_001	Banana	mitochondrion	40.64	46.94
KXG24567	Sorghum	cytosol, plastid	41.87	45.93
TraesCS3B01G498800.1	Wheat	cytosol	40.64	45.01
TraesCS3D01G451700.1	Wheat	cytosol	40.46	44.73
TraesCS3A01G459100.1	Wheat	cytosol, plastid	40.46	44.55
HORVU3Hr1G098720.3	Barley	cytosol	40.11	44.25
CDY58595	Canola	mitochondrion	25.09	43.96
CDY53122	Canola	mitochondrion	24.91	43.65
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	41.34	42.86
GSMUA_Achr6P02830_001	Banana	cytosol	44.52	42.86
Os08t0175200-01	Rice	nucleus	41.34	41.71
Zm00001d024425_P003	Maize	cytosol	41.7	41.62
CDY69937	Canola	plastid	26.15	35.66
CDX75521	Canola	plastid	27.21	35.57
CDX69159	Canola	plastid	27.56	35.45
CDY41639	Canola	plastid	26.5	34.88
CDX87282	Canola	cytosol	11.13	31.19
CDY49898	Canola	mitochondrion	11.84	24.45
CDY49897	Canola	nucleus	11.48	24.25
CDX87899	Canola	nucleus	11.48	23.55
CDY52976	Canola	mitochondrion	12.72	23.3
CDY20110	Canola	nucleus	9.72	23.01
CDX87900	Canola	mitochondrion	11.48	22.57
CDY21093	Canola	mitochondrion	15.72	22.53
CDY50176	Canola	mitochondrion	15.55	22.34
CDY19375	Canola	mitochondrion	16.08	22.3
CDY21843	Canola	nucleus	9.54	22.04
CDY41108	Canola	nucleus	13.6	20.37
CDX78503	Canola	mitochondrion	12.54	20.17
CDY37561	Canola	nucleus	13.43	20.16
CDX70491	Canola	mitochondrion	13.07	19.53
CDX98558	Canola	plastid	8.83	19.38
CDX97673	Canola	plastid	8.83	19.38
CDY33850	Canola	mitochondrion	12.37	19.28
CDY22873	Canola	mitochondrion	12.19	19.27
CDX93076	Canola	mitochondrion	8.13	19.01
CDX82713	Canola	mitochondrion	28.45	17.52
CDY35879	Canola	mitochondrion	28.09	17.34
CDY43502	Canola	mitochondrion	27.74	16.79
CDY15051	Canola	cytosol	4.77	15.25
CDX68838	Canola	nucleus	13.6	12.22
CDX75238	Canola	nucleus	13.6	12.2

Protein Annotations

EnsemblPlants:CDY46461	EnsemblPlantsGene:GSBRNA2T00084046001	Gene3D:1.20.1260.60	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031
InterPro:Ist1	ncoils:Coil	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	PFAM:PF03398	ProteinID:CDY46461
ProteinID:CDY46461.1	SEG:seg	UniParc:UPI0004EDE5D8	UniProt:A0A078I9C6	MapMan:35.2	:

Description

BnaA08g06470DBnaA08g06470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I9C6]

Coordinates

chrLK032668:-:113539..115995

Molecular Weight (calculated)

63277.4 Da

IEP (calculated)

4.821

GRAVY (calculated)

-0.773

Length

566 amino acids

Sequence
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEIIEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQLLFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAQEHQ LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KVPLKEEQDK GSHLTMLSLS RPEEQRQSDS DSEYEELDFP EVPNVLLRPT PAATYEHTSL DLPFVSESPG QDNLPSKRDE HTAKASSTVF
301: EGQTESDPVK QNSYSPPPVG AVGSFSTNES DAPKKISDLD LQDVLTAAQA AADSAERAAA AARSAASLAQ LRINELTKKT PEQSSPESPT ENPFYSSPPQ
401: QTMEKAQFDH QNSSASSYGD HTEFQKEESS SLFSHQTERL PSMEKPQFDH QNSSASSYGD LTDFQLGDYS SPFNQQQAGR LPSFEKTRFD HQNSSVSSYG
501: DITELQRPEN SSFDRLTPDQ DHQQMRLPSR EDDPYYSYPN LFTSQNLDRS PGSRSFSDTS KPAHDS

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.