Factsheet for VIT_18s0164g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70215	Soybean	nucleus	63.82	64.06
KRH08570	Soybean	nucleus	62.15	63.45
PGSC0003DMT400070850	Potato	cytosol	59.93	61.17
Solyc04g072560.2.1	Tomato	nucleus, unclear	58.81	60.04
GSMUA_Achr5P23420_001	Banana	mitochondrion	49.35	54.29
KXG24567	Sorghum	cytosol, plastid	50.83	53.1
KRH35011	Soybean	mitochondrion	37.48	51.93
TraesCS3B01G498800.1	Wheat	cytosol	48.79	51.47
HORVU3Hr1G098720.3	Barley	cytosol	48.98	51.46
Bra036745.1-P	Field mustard	nucleus	53.62	51.06
CDY46461	Canola	cytosol, mitochondrion, nucleus	53.62	51.06
TraesCS3A01G459100.1	Wheat	cytosol, plastid	48.42	50.78
TraesCS3D01G451700.1	Wheat	cytosol	48.05	50.59
CDX91784	Canola	nucleus	53.99	50.17
Os08t0175200-01	Rice	nucleus	51.95	49.91
Zm00001d049479_P003	Maize	cytosol, mitochondrion, plastid	50.46	49.82
GSMUA_Achr6P02830_001	Banana	cytosol	53.8	49.32
Zm00001d024425_P003	Maize	cytosol	50.46	47.97
VIT_01s0011g03610.t01	Wine grape	mitochondrion	28.39	46.5
AT1G34220.1	Thale cress	nucleus	54.55	45.3
VIT_00s1235g00010.t01	Wine grape	mitochondrion	28.94	44.83
CDY48635	Canola	cytosol	27.09	43.58
VIT_14s0006g03050.t01	Wine grape	mitochondrion	12.43	42.95
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	23.38	34.9
VIT_12s0059g01700.t01	Wine grape	golgi	14.1	32.62
VIT_01s0011g03330.t01	Wine grape	mitochondrion	21.52	24.79
VIT_09s0002g04580.t01	Wine grape	nucleus	15.21	16.37
VIT_11s0016g02580.t01	Wine grape	mitochondrion	32.84	15.01
VIT_11s0016g04010.t01	Wine grape	nucleus	16.33	12.12

Protein Annotations

Gene3D:1.20.1260.60	EntrezGene:100245921	wikigene:100245921	MapMan:35.2	EMBL:AM446931	ProteinID:CAN60958
ProteinID:CAN60958.1	ProteinID:CCB58827	ProteinID:CCB58827.1	ncoils:Coil	UniProt:F6HVW4	EMBL:FN596259
GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	InterPro:Ist1	EntrezGene:LOC100245921	wikigene:LOC100245921
PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF5	TIGR:TC56796	TIGR:TC64837	UniParc:UPI00015CCBC2
ArrayExpress:VIT_18s0164g00040	EnsemblPlantsGene:VIT_18s0164g00040	EnsemblPlants:VIT_18s0164g00040.t01	unigene:Vvi.14950	RefSeq:XP_002275027	RefSeq:XP_002275027.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:+:18227285..18232331

Molecular Weight (calculated)

59860.1 Da

IEP (calculated)

4.837

GRAVY (calculated)

-0.601

Length

539 amino acids

Sequence
(BLAST)

001: MSMLDSFFNK GFKGSKCKTL LKLTIPRIKL LRNRREIQIK QMRRDIAKLL ETGQEATARI RVEHIIREEN MMAAQEIIEL YCELISVRLP IIETQRECPL
101: DLKEAISSLC FAAPRCADLP ELLQVQMLMA SKYGKEFVAA ATELMPDCGV CRQLIELLSV RAPSPDVKLK LLKEIAEEHG LDWDPAASET EFFKPHEDLL
201: NGPTQFVSGS KLPLPKEKHD ESLHSASEQT PKEEDSDSDA GFFDPLDFPE VPKATLQPRV DAVSPPAMFP PSPSAPHHQV NYEALRHSEV NENLLRQPHP
301: QPQEAAEERT VADRNESPDV SVKAMEDKQF VPFISRPILA SASFSARQNN PPPPPNLSRT KTEADIDLQD VLAAAQVAAE SAERAAAAAR SAASLAQVRI
401: AEIMKKNDQV LDSSCENPFH TDTSDQSPTT EKPHVDHHNS LGDSDGVSNP LDAHQDPENY QASEALNLPS YDRDKVGIDS SPSDDHVIED KPAHHQPQRL
501: PSMDDDSYFS YPNLFTSQGS NLGSGVHSFT DTSRSTHEH

Best Arabidopsis Sequence Match ( AT1G34220.2 )
(BLAST)

001: MSMLDSFFNK GFKAAKCKTL LKLTIPRIKL IRNRREAQIK QMRREIAKLL ETGQEATARI RVEHIIREEK MMAAQEILEL FCELIAVRLP IIEAQRECPL
101: DLKEAISSVC FAAPRCSDLT ELQQVQILFV SKYGKEFVAA ASELKPDSGV NRKLVELLSV RAPSPETKLK LLKEIAEEHE LDWDPASTET DLFKSHEDLL
201: DGPKQFGGGS KLPLPEEQNE KTNLTSLSAA KEKSDSDSEY DILDFPEVPN VLLRPTPGAT SVNAPDAAKS ASYEHTSHDL PFDSENAGVE KTASKRDEHP
301: AKASKTVVEG QQSSPILMES FEKKNYSPPS IDAVGPIPTK ESGASRDTPR KISDGDLQDV LMAAQAAADS AERAASAARS AASLAQLRIN ELTRKTSDQY
401: PESPSENPFH APSMGNLQFD HQNSSASSSG DLTELQRAET SSLFNSEQNN QQPQTHSSME KPQFDRQNSS FSSYGDLTPQ RFHSMEKPQF DHQNSSGSNY
501: DDLTPQRFSS LEKPQFDHQN SSGSNYDDLT PHRFPSMEKP QFDHQNSSVS SYGDLPELQR PETSPLDRLS PDQDHQQMRL PSMEDDPYYS YPNLFTSQKH
601: DPSSGSHSFS DNTRPAHDS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:UniProtKB/TrEMBL;Acc:F4HUX0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.