Factsheet for VIT_12s0059g01700.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1
extracellular 1
golgi 2
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0006g03050.t01	Wine grape	mitochondrion	23.61	35.26
CDX78503	Canola	mitochondrion	46.78	30.97
Bra006177.1-P	Field mustard	mitochondrion	45.49	30.11
AT2G14830.1	Thale cress	mitochondrion	48.07	29.17
CDX70491	Canola	mitochondrion	46.35	28.5
Solyc12g010700.1.1	Tomato	cytosol	55.36	28.48
CDY22873	Canola	mitochondrion	41.2	26.82
CDY33850	Canola	mitochondrion	40.34	25.9
KRH70127	Soybean	mitochondrion, nucleus	36.48	22.37
PGSC0003DMT400020212	Potato	cytosol	37.77	22.28
KRH22410	Soybean	mitochondrion, nucleus	62.23	21.77
KRH26928	Soybean	nucleus	61.8	21.72
VIT_00s1235g00010.t01	Wine grape	mitochondrion	30.47	20.4
VIT_01s0011g03610.t01	Wine grape	mitochondrion	27.47	19.45
PGSC0003DMT400047266	Potato	nucleus	36.48	15.62
VIT_18s0164g00040.t01	Wine grape	nucleus	32.62	14.1
VIT_09s0002g04580.t01	Wine grape	nucleus	29.61	13.77
VIT_00s0302g00010.t01	Wine grape	endoplasmic reticulum	21.03	13.57
VIT_01s0011g03330.t01	Wine grape	mitochondrion	25.75	12.82
AT1G51900.1	Thale cress	mitochondrion	32.62	9.82
VIT_11s0016g04010.t01	Wine grape	nucleus	28.33	9.09
VIT_11s0016g02580.t01	Wine grape	mitochondrion	29.18	5.77
Solyc07g054230.2.1	Tomato	nucleus	9.44	4.9

Protein Annotations

Gene3D:1.20.1260.60	MapMan:35.2	ProteinID:CBI28894	ProteinID:CBI28894.3	UniProt:D7TEH1	EMBL:FN595765
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015031	GO:GO:0016020	GO:GO:0016021
InterPro:Ist1	PFAM:PF03398	PANTHER:PTHR12161	PANTHER:PTHR12161:SF18	UniParc:UPI0001BE2F7A	ArrayExpress:VIT_12s0059g01700
EnsemblPlantsGene:VIT_12s0059g01700	EnsemblPlants:VIT_12s0059g01700.t01	:	:	:	:

Description

No Description!

Coordinates

chr12:-:6599739..6602709

Molecular Weight (calculated)

27305.8 Da

IEP (calculated)

9.584

GRAVY (calculated)

-0.142

Length

233 amino acids

Sequence
(BLAST)

001: MYWRSNQKQP AKLFIFKKLK YKQCVILIMF DILFGWRKAS KCKKLIMRVQ CRLKLLKNKR CCIVRQLRED VAELLKNGHQ DVAFKRAEQL FKDESIVAVY
101: ELLDHFCEFI TINLSYIRRH KDCPNDINEA ISSLIFASAR CGDLPELRAI RKLFGERYGQ RFAMSAVELY PGNLVNCQVK ENLSIKSVSD DMKHRLVDEI
201: ARSNSLQQLP LALEYGSELQ QQQVMFIFIL SLC

Best Arabidopsis Sequence Match ( AT2G14830.1 )
(BLAST)

001: MFCFLFGWRR TSKCKSVVKQ LQCRLNLLKN KKYAISSHLR NDIAQLLRIG ERDRALHRAQ QLFLDENLMS LYHLLLHFSD IILLNLSYIR RRRDLPDGIN
101: EAVSTLVFAS ARCGDLPELR ALRVLFGKRY GNHFVDTALN LLPGNCVNPQ VIEKLSIISV SDDAKSKLLG EIVEEYNLRL EVLAIEYTPE FHKQVLKSEK
201: AEEEKEVMSS NSAQPYCSSQ KAESEAEVYK FTLTDADIEE NQEQERKVCD EEDDCIEEEV VEEDQSVFRF RESTEDERKE RKRLRRKPRS TSSSSSPIAK
301: DVDCWRYYYK GKRSRQRKEC GKCCYHIVYN VFTMLPDQKE SEEGERSFKK AMHVHPKLPD YDQIVAHFTA LRKQQQQKQK HMRS

Arabidopsis Description

Regulator of Vps4 activity in the MVB pathway protein [Source:TAIR;Acc:AT2G14830]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.